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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCCTATCAGTGTGATGTTTGGAATGTGCGCAATATTTCTGGCACTGGCTGGTGTCTTGCAGCGCCGGCTCTTGATGGTTTCTGACAAGCACAGAAGCAgtgagttagattcgctcttgactaccttacatgatgttctaaatgttaagtttgtcttgtattaatcgcaggacatgttcgaatgtgctgggacaatttataatgtgtcataatctcttcttttgcag

Basic information

species Physcomitrella patens
transcript PP1S18_8V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162188273|gb|FC364767.1|FC364767
EST:     TGGTGTCTTGCAGCGCCGGCTCTTGATGGTTTCTGACAAGCACAGAAGCA                         GGTCAATTGAGACGTGGACGACTGAGAAGGGAGCTGAATTAGAACCCCTCA
genomic: TGGTGTCTTGCAGCGCCGGCTCTTGATGGTTTCTGACAAGCACAGAAGCAgtgagttaga ... tcttttgcagGGTCAATTGAGACGTGGACGACTGAGAAGGGAGCTGAATTAGAACCCCTCA
EST: gi|162157593|gb|FC332915.1|FC332915
EST:     TTCTGACAAGCACAGAAGCA                         GGTCAATTGAGACGTGGACGACTGAGAAGGGAGCTGAATTAGAACCCCTCA
genomic: TTCTGACAAGCACAGAAGCAgtgagttaga ... tcttttgcagGGTCAATTGAGACGTGGACGACTGAGAAGGGAGCTGAATTAGAACCCCTCA
EST: gi|67699475|gb|BJ959708.1|BJ959708
EST:     TGGTGTCTTGCAGCGCCGGCTCTTGATGGTTTCTGACAAGCACAGAAGCA                         GGTCAATTGAGACGTGGACGACTGAGAAGGGAGCTGAATTAGAACCCCTCA
genomic: TGGTGTCTTGCAGCGCCGGCTCTTGATGGTTTCTGACAAGCACAGAAGCAgtgagttaga ... tcttttgcagGGTCAATTGAGACGTGGACGACTGAGAAGGGAGCTGAATTAGAACCCCTCA
EST: gi|208372439|gb|DC952283.1|DC952283
EST:     TGGTGTCTTGCAGCGCCGGCTCTTGATGGTTTCTGACAAGCACAGAAGCA                         GGTCAATTGAGACGTGGACGACTGAGAAGGGAGCTGAATTAGAACCCCTCA
genomic: TGGTGTCTTGCAGCGCCGGCTCTTGATGGTTTCTGACAAGCACAGAAGCAgtgagttaga ... tcttttgcagGGTCAATTGAGACGTGGACGACTGAGAAGGGAGCTGAATTAGAACCCCTCA
EST: gi|67694445|gb|BJ954678.1|BJ954678
EST:     TGGTGTCTTGCAGCGCCGGCTCTTGATGGTTTCTGACAAGCACAGAAGCA                         GGTCAATTGAGACGTGGACGACTGAGAAGGGAGCTGAATTAGAACCCCTCA
genomic: TGGTGTCTTGCAGCGCCGGCTCTTGATGGTTTCTGACAAGCACAGAAGCAgtgagttaga ... tcttttgcagGGTCAATTGAGACGTGGACGACTGAGAAGGGAGCTGAATTAGAACCCCTCA
EST: gi|162268231|gb|FC444520.1|FC444520
EST:     TGGTGTCTTGCAGCGCCGGCTCTTGATGGTTTCTGACAAGCACAGAAGCA                         GGTCAATTGAGACGTGGACGACTGAGAAGGGAGCTGAATTAGAACCCCTCA
genomic: TGGTGTCTTGCAGCGCCGGCTCTTGATGGTTTCTGACAAGCACAGAAGCAgtgagttaga ... tcttttgcagGGTCAATTGAGACGTGGACGACTGAGAAGGGAGCTGAATTAGAACCCCTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCCCTATCAGTGTGATGTTTGGAATGTGCGCAATATTTCTGGCACTGGCTGGTGTCTTGCAGCGCCGGCTCTTGATGGTTTCTGACAAGCACAGAAGCAgtgagttagattcgctcttgactaccttacatgatgttctaaatgttaagtttgtcttgtattaatcgcaggacatgttcgaatgtgctgggacaatttataatgtgtcataatctcttcttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC