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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGGTTCTACAGAAAGACGTCGGTCACGGCGATTAACAGTTTCTTTCTTCTGTACTGTCGCCAACTACGAGTACGGGTTTTACTGGCATTTCTATCAGgtttactgctctaactgcttacctacttgcatgttggacccataaatgacttgttaaaggatttcggtgttttttgcacatgtaacttttcatcaagatg...

Basic information

species Physcomitrella patens
transcript PP1S178_54V6.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S178_54V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA06G18810.1 (Glycine max), 5'ss of exon 7
AACTGGTTCTACAGAAAGACGTCGGTCACGGCGATTAACAGTTTCTTTCTTCTGTACTGTCGCCAACTACGAGTACGGGTTTTACTGGCATTTCTATCAGgtttactgc-tctaactgcttacctacttgcatgttggacccataaatgacttgttaaaggatttcggtgtt---ttttgcacatgtaacttttcatcaagatg-------
           |||||   ||  | ||  |  || | |||||||||||| | |||||||| |||||||| ||||| || ||||  |||||||| |||||||      |  | | ||  | |    |    ||  |  |  |    |||||| | |||||  | |    ||||   | ||| | |  | ||   |   ||  ||        
---------AGCAGAAGTCCGAAGATCTAGAAGACTTACAGTTTCTTTCATATGTACTGTTGCCAACTATGAGTATGGATTTTTTTGGCATTTTTATCAGGCAAGTAGGgtatcacatccttttaagagacaaatatg--ctgacaatgacattttaaatcaatcttatgttaattattgtaaaattcacaaatatccagtatcttccgac

upper sequence: PP1S178_54V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: AT2G42490.1 (Arabidopsis thaliana), 5'ss of exon 7
AACTGGTTCTACAGAAAGACGTCGGTCACGGCGATTAACAGTTTCTTTCTTCTGTACTGTCGCCAACTACGAGTACGGGTTTTACTGGCATTTCTATCAGgtt--tactgctctaactgcttacctacttgcatgttggacccataaatgacttgt-taaaggatttcggtgttttttgcacatgtaacttttcatcaagatg
||| || |   | |||   ||  | ||  || || |||| || |||||  | |||||||| |||||||||||||| |||||||||||||| ||||| ||||||  |      |    | |||   | ||||  |   | |   || | | |  | |  |    |||||  |        || |||     | ||  || |   
AACAGGATTAGCCGAAGTGCGAAGATCTAGGAGACTAACTGTCTCTTTTCTATGTACTGTTGCCAACTACGAGTATGGGTTTTACTGGCACTTCTACCAGgttagtggaatacgtgattcttcatttcttgagtaaagcagatattagtcatatttgcatctaatttctatagggaagacaaatgatgtgtctccgcatg---