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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGAACAATGGGCATTGTGGATTTCACCAACTACGACGATATGAAATACGCCgtaagtatggtatctagactggcatttctcttctcggctgactgcatgtatgtcacctacatgcatgtcttcagatgatttgtttgttctatcgcatctcgtatttattttttatttttatttttatttttatttttttgtag

Basic information

species Physcomitrella patens
transcript PP1S173_12V6.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S173_12V6.3 (Physcomitrella patens), 5'ss of exon 9
lower sequence: EFJ21034 (Selaginella moellendorffii), 5'ss of exon 5
CTGGAACAATGGGCATTGTGGATTTCACCAACTACGACGATATGAAATACGCCgtaagtatggtatctagactggcatttctcttctcggctgactgcatgtatgtcacctacatgcatgtcttcagatgatttgtttgttctatcgcatctcgtatttattttttatttttatttttatttttatttttttgtag
   |||| |  |||||||||||||||||||| || ||||||||||||||||| ||     |  | | |      | || |    | | |   ||||| |  |   |   |||      ||| ||  ||                                                                    
---GAACTACTGGCATTGTGGATTTCACCAATTATGACGATATGAAATACGCGgt-----taatttttctttctgtatattctcttttgctggactggagattgatt--cta-----gtgttttttgacag-----------------------------------------------------------------

upper sequence: PP1S173_12V6.3 (Physcomitrella patens), 5'ss of exon 9
lower sequence: EFJ19466 (Selaginella moellendorffii), 5'ss of exon 5
CTGGAACAATGGGCATTGTGGATTTCACCAACTACGACGATATGAAATACGCCgtaagtatggtatctagactggcatttctcttctcggctgactgcatgtatgtcacctacatgcatgtcttcagatgatttgtttgttctatcgcatctcgtatttattttttatttttatttttatttttatttttttgtag
   |||| |  |||||||||||||||||||| || ||||||||||||||||| ||     |  | | |      | || |    | |     ||||| |  |   |   |||   |  | |   |||                                                                     
---GAACTACTGGCATTGTGGATTTCACCAATTATGACGATATGAAATACGCGgt-----taatttttctttctgtatattctcttttactggactggagattgatt--cta---gtgttttgacag---------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37846921|gb|BJ604929.1|BJ604929
EST:     ACGACGATATGAAATACGCC                         ATTCGGAAAGTTGGACGACTCAGAATTCCGCAACCCATTTTCTCGTTCCTT
genomic: ACGACGATATGAAATACGCCgtaagtatgg ... ttttttgtagATTCGG-AAGTTGGACGACTCAGAATTCCGCAACCCATTTTCTCGTTCTTT