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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTTCTCATTGCAATGTGTTAGCATACAGTAGCAGCAAGGGCTCTATTCGACTCATTGATATGCGTCAATCAGCCTTGTGTGATCGACATTCAAAGCTgtatgttattttcttttgtttccagcacatggtttctcggcacagtcgatccatttgttgaagtgcttttgtagagtaagttgatttagatttattgtgt...

Basic information

species Physcomitrella patens
transcript PP1S167_51V6.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S167_51V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: LOC_Os06g36770.2 (Oryza sativa), 5'ss of exon 8
ATCCTTCTCATTGCAATGTGTTAGCATACAGTAGCAGCAAGGGCTCTATTCGACTCATTGATATGCGTCAATCAGCCTTGTGTGATCGACATTCAAAGCTgtatgttattt-tcttttgtttccagc-----acatggtttctcggcacagtcgatccatttgttgaagtgcttttgtagagtaag--------ttgatttagatttattgtgt---------------------------------------------------------
| ||  ||||||| |||    | || || || ||    ||||| ||||| |||||||||||| |||| |||||||| ||||||||    ||||| ||| |||  || |||  |||| ||  |    |     ||||  | ||   |   | | ||   | | || | | | ||||||  |  |  |         ||  | |||||   | |                                                           
ACCCAACTCATTGTAATACACTGGCCTATAGCAGTTCAAAGGGTTCTATCCGACTCATTGATCTGCGACAATCAGCTTTGTGTGACAACCATTCCAAGATgttagtaattcatcttatgccttttacctgcaacattttatccgtgtgtactggaggtagtcgt-ggacttcttttgacggttgggacttggggctgcataagattctctattctatactagtaatagaatgtcacaatatcagcatgagataacaagaacctttaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162181126|gb|FC357285.1|FC357285
EST:     CGACTCATTGATATGCGTCAATCAGCCTTGTGTGATCGACATTCAAAGCT                         GTTTGAGGAGACTGAGCATGCTGGATCAAGATCCTTTTTTACAGAAATCAT
genomic: CGACTCATTGATATGCGTCAATCAGCCTTGTGTGATCGACATTCAAAGCTgtatgttatt ... gtgggtgcagGTTTGAGGAGACTGAGCATGCTGGATCAAGATCCTTTTTTACAGAAATCAT
EST: gi|100366505|gb|BY985168.1|BY985168
EST:     CGACTCATTGATATGCGTCAATCAGCCTTGTGTGATCGACATTCAAAGCT                         GTTTGAGGAGACTGAGCATGCTGGATCAAGATCCTTTTTTACAGAAATCAT
genomic: CGACTCATTGATATGCGTCAATCAGCCTTGTGTGATCGACATTCAAAGCTgtatgttatt ... gtgggtgcagGTTTGAGGAGACTGAGCATGCTGGATCAAGATCCTTTTTTACAGAAATCAT