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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATAGTAGGAAGCCCTGGTCAAAGTTCTTAAATTCTGACAACCAACATTTGGTTGCTCCTGAGgtacgtatctcaattttctagaactgctactgacattttttcactattctatttgtatttgtgtagctcaagagctgtgttttggtatgagttgctaagc...

Basic information

species Physcomitrella patens
transcript PP1S165_107V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162271756|gb|FC448889.1|FC448889
EST:     CCTGGTCAAAGTTCTTAAATTCTGACAACCAACATTTGGTTGCTCCTGAG                         GCAGTAGATTTCTTGGACAAGCTTCTGCGGTATGACCATCAAGAAAGGCTT
genomic: CCTGGTCAAAGTTCTTAAATTCTGACAACCAACATTTGGTTGCTCCTGAGgtacgtatct ... gcctatgcagGCAGTAGATTTCTTGGACAAGCTTCTGCGGTATGACCATCAAGAAAGGCTT
EST: gi|162240845|gb|FC417516.1|FC417516
EST:     CCTGGTCAAAGTTCTTAAATTCTGACAACCAACATTTGGTTGCTCCTGAG                         GCAGTAGATTTCTTGGACAAGCTTCTGCGGTATGACCATCAAGAAAGGCTT
genomic: CCTGGTCAAAGTTCTTAAATTCTGACAACCAACATTTGGTTGCTCCTGAGgtacgtatct ... gcctatgcagGCAGTAGATTTCTTGGACAAGCTTCTGCGGTATGACCATCAAGAAAGGCTT
EST: gi|162255256|gb|FC431566.1|FC431566
EST:     CCTGGTCAAAGTTCTTAAATTCTGACAACCAACATTTGGTTGCTCCTGAG                         GCAGTAGATTTCTTGGACAAGCTTCTGCGGTATGACCATCAAGAAAGGCTT
genomic: CCTGGTCAAAGTTCTTAAATTCTGACAACCAACATTTGGTTGCTCCTGAGgtacgtatct ... gcctatgcagGCAGTAGATTTCTTGGACAAGCTTCTGCGGTATGACCATCAAGAAAGGCTT
EST: gi|37834022|gb|BJ592034.1|BJ592034
EST:     CCTGGTCAAAGTTNTTAAATTNTGACAACCAACATTTGGTTGCTCCTGAG                         GCAGTAGATTTCTTGGACAAGCTTCTGCGGTATGACCATCAAGAAAGGCTT
genomic: CCTGGTCAAAGTTCTTAAATTCTGACAACCAACATTTGGTTGCTCCTGAGgtacgtatct ... gcctatgcagGCAGTAGATTTCTTGGACAAGCTTCTGCGGTATGACCATCAAGAAAGGCTT
EST: gi|37829629|gb|BJ587641.1|BJ587641
EST:     CCTGGTCAAAGTTCTTAAATTCTGACAACCAGCATTTGGTTGCTCCTGAG                         GCAGTAGATTTCTTGGACAAGCTTCTGCGGTATGACCATCAAGAAAGGCTT
genomic: CCTGGTCAAAGTTCTTAAATTCTGACAACCAACATTTGGTTGCTCCTGAGgtacgtatct ... gcctatgcagGCAGTAGATTTCTTGGACAAGCTTCTGCGGTATGACCATCAAGAAAGGCTT
EST: gi|162240846|gb|FC417517.1|FC417517
EST:     CCTGGTCAAAGTTCTTAAATTCTGACAACCAACATTTGGTTGCTCCTGAG                         GCAGTAGATTTCTTGGACAAGCTTCTGCGGTATGACCATCAAGAAAGGCTT
genomic: CCTGGTCAAAGTTCTTAAATTCTGACAACCAACATTTGGTTGCTCCTGAGgtacgtatct ... gcctatgcagGCAGTAGATTTCTTGGACAAGCTTCTGCGGTATGACCATCAAGAAAGGCTT