1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCCCCAACGGAGTGGAGTGGAGGTGTCGGGTTTGTGACGAAGGATATGATTGAGAGACATTGTCCTCCTCCAGCTGCTGATGTTCAGgtatttacctttgagattgcaggagtttttctctggcaaaattacgcaattgtagaactgatgtttggatcggttatctaaagatctatttatttgtcctaagaggatgtccatctcaatatgtccatgaacttctctaacataaatcaaaatgtggcag
species | Physcomitrella patens |
transcript | PP1S165_105V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CGAANGATATGATTGAGAGACATTGTCCTCCTCCAGCTGCTGATGTTCAG ATTCTGCGTTGTGGTCCTCCACCCEST: gi|7583600|gb|AW699509.1|AW699509
genomic: CGAAGGATATGATTGAGAGACATTGTCCTCCTCCAGCTGCTGATGTTCAGgtatttacct ... aatgtggcagATTCTGCGTTGTGGTCCTCCACCC
EST: CGAAGGATATGATTGAGAGACATTGTCCTCCTCCAGCTGCTGATGTTCAG ATTCTGCGTTGTGGTCCTCCACCCATGAACAGGGCCATAGCAGGCCATTGTEST: gi|208365412|gb|DC950879.1|DC950879
genomic: CGAAGGATATGATTGAGAGACATTGTCCTCCTCCAGCTGCTGATGTTCAGgtatttacct ... aatgtggcagATTCTGCGTTGTGGTCCTCCACCCATGAACAGGGCCATAGCAGGCCATTGT
EST: CGAAGGATATGATTGAGAGACATTGTCCTCCTCCAGCTGCTGATGTTCAG ATTCTGCGTTGTGGTCCTCCACCCATGAACAGGGCCATAGCAGGCCATTGTEST: gi|162222464|gb|FC397198.1|FC397198
genomic: CGAAGGATATGATTGAGAGACATTGTCCTCCTCCAGCTGCTGATGTTCAGgtatttacct ... aatgtggcagATTCTGCGTTGTGGTCCTCCACCCATGAACAGGGCCATAGCAGGCCATTGT
EST: CGAAGGATATGATTGAGAGACATTGTCCTCCTCCAGCTGCTGATGTTCAG ATTCTGCGTTGTGGTCCTCCACCCATGAACAGGGCCATAGCAGGCCATTGTEST: gi|208378861|gb|DC927563.1|DC927563
genomic: CGAAGGATATGATTGAGAGACATTGTCCTCCTCCAGCTGCTGATGTTCAGgtatttacct ... aatgtggcagATTCTGCGTTGTGGTCCTCCACCCATGAACAGGGCCATAGCAGGCCATTGT
EST: CGAAGGATATGATTGAGAGACATTGTCCTCCTCCAGCTGCTGATGTTCAG ATTCTGCGTTGTGGTCCTCCACCCATGAACAGGGCCATAGCAGGCCATTGT
genomic: CGAAGGATATGATTGAGAGACATTGTCCTCCTCCAGCTGCTGATGTTCAGgtatttacct ... aatgtggcagATTCTGCGTTGTGGTCCTCCACCCATGAACAGGGCCATAGCAGGCCATTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCCAACGGAGTGGAGTGGAGGTGTCGGGTTTGTGACGAAGGATATGATTGAGAGACATTGTCCTCCTCCAGCTGCTGATGTTCAGgtatttacctttgagattgcaggagtttttctctggcaaaattacgcaattgtagaactgatgtttggatcggttatctaaagatctatttatttgtcctaagaggatgtccatctcaatatgtccatgaacttctctaacataaatcaaaatgtggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT