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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACGAACTTCATGTCGGACATTGCGGATGAGTACAAGATTGTGGTGGTGGAAGCCATCCGCTCCTTGTGCCTCAAGTTTCCTCAGAAATACCGTTCATTgtaagtgtcaaatcatagaaccgttccagtgtacatcgtttcttagcaaatttcctggtggatgcttttgtcgtattttttgcctcgagatgtttgtttt...

Basic information

species Physcomitrella patens
transcript PP1S15_298V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162151629|gb|FC327758.1|FC327758
EST:     GAAGCCATCCGCTCCTTGTGCCTCAAGTTTCCTCAGAAATACCGTTCATT                         AATGAATTTCCTGAGCAACATTTTAAGGGAGGAAGGAGGTTTCGAATACAA
genomic: GAAGCCATCCGCTCCTTGTGCCTCAAGTTTCCTCAGAAATACCGTTCATTgtaagtgtca ... gtttttgcagAATGAATTTCCTGAGCAACATTTTAAGGGAGGAAGGAGGTTTCGAATACAA
EST: gi|162177638|gb|FC353224.1|FC353224
EST:     GAAGCCATCCGCTCCTTGTGCCTCAAGTTTCCTCAGAAATACCGTTCATT                         AATGAATTTCCTGAGCAACATTTTAAGGGAGGAAGGAGGTTTCGAATACAA
genomic: GAAGCCATCCGCTCCTTGTGCCTCAAGTTTCCTCAGAAATACCGTTCATTgtaagtgtca ... gtttttgcagAATGAATTTCCTGAGCAACATTTTAAGGGAGGAAGGAGGTTTCGAATACAA
EST: gi|162151227|gb|FC327187.1|FC327187
EST:     GAAGCCATCCGCTCCTTGTGCCTCAAGTTTCCTCAGAAATACCGTTCATT                         AATGAATTTCCTGAGCAACATTTTAAGGGAGGAAGGAGGTTTCGAATACAA
genomic: GAAGCCATCCGCTCCTTGTGCCTCAAGTTTCCTCAGAAATACCGTTCATTgtaagtgtca ... gtttttgcagAATGAATTTCCTGAGCAACATTTTAAGGGAGGAAGGAGGTTTCGAATACAA