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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCCAAGAGACTGGAGGAACTTCGTCAAGAATATGAACGCATGATGAAACCTCAACCACATCCAGAGAACCCCCATATATAATgtatcaccaccgattgcaagagtgtctacattatgctccaacaaaggacagaaaatacacagttgtgaaccctattgacccctattttttttttttttatttatttattttttttttttgatcttgcag

Basic information

species Physcomitrella patens
transcript PP1S15_13V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67721946|gb|BJ972205.1|BJ972205
EST:     TGAACGCATGATGAAACCTCAACCACATCCAGAGAACCCCCATATATAAT                         GTATCTATCGTCTTTGGGGGCTTGCGAGCAAAATACTCTCACAAGCCTACA
genomic: TGAACGCATGATGAAACCTCAACCACATCCAGAGAACCCCCATATATAATgtatcaccac ... gatcttgcagGTATCTATCGTCTTTGGGGGCTTGCGAGCAAAATACTCTCACAAGCCTACA
EST: gi|37831619|gb|BJ589631.1|BJ589631
EST:     ACATCCAGAGAACCCCCATATATTAAT                         GTATCTATCGTCTTTGGGGGCTTGCGAGCAAAATACTCTCACAAGCCTAC
genomic: ACATCCAGAGAACCCCCATATA-TAATgtatcaccac ... gatcttgcagGTATCTATCGTCTTTGGGGGCTTGCGAGCAAAATACTCTCACAAGCCTAC