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CATGGAATTCTGCTGGAAAAGGAAAACAGACGGTCTTCACTGTTGACCAATTGGAGAAGATGATGGAGGATCCAACAGTTCAAAAGATGGTTTACCCgtatgacctttttagacctcaaccaatcttgtgctcttgagattggaagtttcatcttatttattttgacaagacatcttggtgtttagggcaatcctgc...
species | Physcomitrella patens |
transcript | PP1S159_2V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAATTGGAGAAGATGATGGAGGATCCAACAGTTCAAAAGATGGTTTACCC GTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAATEST: gi|162279998|gb|FC456184.1|FC456184
genomic: CAATTGGAGAAGATGATGGAGGATCCAACAGTTCAAAAGATGGTTTACCCgtatgacctt ... tatttgccagGTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAAT
EST: GAGGATCCAACAGTTCAAAAGATGGTTTACCC GTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAATEST: gi|162255997|gb|FC431761.1|FC431761
genomic: GAGGATCCAACAGTTCAAAAGATGGTTTACCCgtatgacctt ... tatttgccagGTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAAT
EST: CAATTGGAGAAGATGATGGAGGATCCAACAGTTCAAAAGATGGTTTACCC GTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAATEST: gi|208346091|gb|DC917044.1|DC917044
genomic: CAATTGGAGAAGATGATGGAGGATCCAACAGTTCAAAAGATGGTTTACCCgtatgacctt ... tatttgccagGTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAAT
EST: CAATTGGAGAAGATGATGGAGGATCCAACAGTTCAAAAGATGGTTTACCC GTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAATEST: gi|208386288|gb|DC953001.1|DC953001
genomic: CAATTGGAGAAGATGATGGAGGATCCAACAGTTCAAAAGATGGTTTACCCgtatgacctt ... tatttgccagGTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAAT
EST: AAAGATGGTTTACCN GTATTTGCCAGAGGAAATGAGGANCCCGACTACTTTCAAATEST: gi|162255998|gb|FC431762.1|FC431762
genomic: AAAGATGGTTTACCCgtatgacctt ... tatttgccagGTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAAT
EST: CAATTGGAGAAGATGATGGAGGATCCAACAGTTCAAAAGATGGTTTACCC GTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAATEST: gi|37836145|gb|BJ594153.1|BJ594153
genomic: CAATTGGAGAAGATGATGGAGGATCCAACAGTTCAAAAGATGGTTTACCCgtatgacctt ... tatttgccagGTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAAT
EST: CAATTGGAGAAGATGATGGAGGATCCAACAGTTCAAAAGATGGTTTACCC GTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAATEST: gi|162194114|gb|FC370289.1|FC370289
genomic: CAATTGGAGAAGATGATGGAGGATCCAACAGTTCAAAAGATGGTTTACCCgtatgacctt ... tatttgccagGTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAAT
EST: CAATTGGAGAAGATGATGGAGGATCCAACAGTTCAAAAGATGGTTTACCC GTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAATEST: gi|162194113|gb|FC370288.1|FC370288
genomic: CAATTGGAGAAGATGATGGAGGATCCAACAGTTCAAAAGATGGTTTACCCgtatgacctt ... tatttgccagGTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAAT
EST: CCAACAGTTCAAAAGATGGTTTACCC GTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAATEST: gi|162279999|gb|FC456185.1|FC456185
genomic: CCAACAGTTCAAAAGATGGTTTACCCgtatgacctt ... tatttgccagGTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAAT
EST: GAGGATCCAACAGNTTCAAAAGAATGGTTTACCC NEST: gi|162279999|gb|FC456185.1|FC456185
genomic: GAGGATCCAACAG-TTCAAAAG-ATGGTTTACCCgtatgacctt ... tatttgccag-
EST: GAGGATCCAACAGNTTCAAAAGAATGGTTTACCC NEST: gi|67727775|gb|BJ978034.1|BJ978034
genomic: GAGGATCCAACAG-TTCAAAAG-ATGGTTTACCCgtatgacctt ... tatttgccag-
EST: CAATTGGAGAAGATGATGGAGGATCCAACAGTTCAAAAGATGGTTTACCC GTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAAT
genomic: CAATTGGAGAAGATGATGGAGGATCCAACAGTTCAAAAGATGGTTTACCCgtatgacctt ... tatttgccagGTATTTGCCAGAGGAAATGAGGAACCCGACTACTTTCAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGGAATTCTGCTGGAAAAGGAAAACAGACGGTCTTCACTGTTGACCAATTGGAGAAGATGATGGAGGATCCAACAGTTCAAAAGATGGTTTACCCgtatgacctttttagacctcaaccaatcttgtgctcttgagattggaagtttcatcttatttattttgacaagacatcttggtgtttagggcaatcctgc
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG