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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAGAATCGATTTGCTAGCAAAGGTGCTCACCTCAATCTCAAACGTGCTGAGAAGGCTCGGGCAGCGATCGCTAAACTTCCAGgtatgaggcgcctatccaatctatctttatccgctgtattgtgatcattgcccttgttcatgtgtttctaccatgtgtaatgcttattgaactgttaacataaatgaatgcag

Basic information

species Physcomitrella patens
transcript PP1S153_95V6.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S153_95V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: LOC_Os06g20370.1 (Oryza sativa), 5'ss of exon 8
GATGAGAATCGATTTG---CTAGCAAAGGTGCTCACCTCAATCTCAAACGTGCTGAGAAGGCTCGGGCAGCGATCGCTAAACTTCCAGgtatga------ggcgcctatccaa---tctatctttatccgctgta-------------ttgtgatcattgcccttgttcatgtg--tttctaccatg-tgtaatgcttattgaactgttaacataaatgaatgcag----------------------------------------------------------
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GATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGTGCTGAAAAGGCTCGGATTCTTGTCAACAAGATTCCAGgtatgtttggatgacagcaatggaaacctctcacttagtcagttgcaaattttttcatacctaggaacactatatatgtccatggggcttattattttactgtaccgttcatttttgttttga-gtaaatttatgaattctgctaatcatatgctttgttagtgtttggctaatgtaatgaatggttttattctag