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ATCTGTAGCATTGGTAGCCGGCATTGAAGGATCTTCTATCAATACCAGATCTCTTGATCCACTTGAAGAGTTTCTGCAGAATATAGACAAATCACTGCAGgttaggagctctttttgatcactctataggaaggacgtgggtactcgtggtgtttacagctaggtgacattcttttcttcaagatcaatcattgatggtc...
species | Physcomitrella patens |
transcript | PP1S144_87V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTCTTGATCCACTTGAAGAGTTTCTGCAGAATATAGACAAATCACTGCAG GCCGGTTCAGTGGACTTGGAGGATTCAGAGGAGAGCGATACTGATGCGGTGEST: gi|162226002|gb|FC401306.1|FC401306
genomic: CTCTTGATCCACTTGAAGAGTTTCTGCAGAATATAGACAAATCACTGCAGgttaggagct ... gtgttttcagGCCGGTTCAGTGGACTTGGAGGATTCAGAGGAGAGCGATACTGATGCGGTG
EST: CAAATCACTGCAG GCCGGTTCAGTGGACTTGGAGGATTCAGAGGAGAGCGATACTGATGCGGTGEST: gi|162163628|gb|FC339746.1|FC339746
genomic: CAAATCACTGCAGgttaggagct ... gtgttttcagGCCGGTTCAGTGGACTTGGAGGATTCAGAGGAGAGCGATACTGATGCGGTG
EST: CTCTTGATCCACTTGAAGAGTTTCTGCAGAATATAGACAAATCACTGCAG GCCGGTTCAGTGGACTTGGAGGATTCAGAGGAGAGCGATACTGATGCGGTGEST: gi|162180514|gb|FC356156.1|FC356156
genomic: CTCTTGATCCACTTGAAGAGTTTCTGCAGAATATAGACAAATCACTGCAGgttaggagct ... gtgttttcagGCCGGTTCAGTGGACTTGGAGGATTCAGAGGAGAGCGATACTGATGCGGTG
EST: TCTTGATCCAC-TGNAAGAGTTTCTGCAGAATATAGACAAATCACTGCAG GCCGGTTCAGTGGACTTGGAGGATTCAGAGGAGAGCGATACTGATGCGGTG
genomic: TCTTGATCCACTTG-AAGAGTTTCTGCAGAATATAGACAAATCACTGCAGgttaggagct ... gtgttttcagGCCGGTTCAGTGGACTTGGAGGATTCAGAGGAGAGCGATACTGATGCGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGTAGCATTGGTAGCCGGCATTGAAGGATCTTCTATCAATACCAGATCTCTTGATCCACTTGAAGAGTTTCTGCAGAATATAGACAAATCACTGCAGgttaggagctctttttgatcactctataggaaggacgtgggtactcgtggtgtttacagctaggtgacattcttttcttcaagatcaatcattgatggtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG