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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGAATATGTACCTCGAGGATCTCCTACCAAAGCTCACCGCACCTGAGGATGATGGCAATTATGGTTCCGCTTCTATGTGCGATGTACTCTGCCTCCAGgtactatgctttccatagtattctagtctatgcagaaagtgatttcagtagtagacttcactagtagtgaagtggtttctggtaggtcgagttgaagtcg...

Basic information

species Physcomitrella patens
transcript PP1S142_106V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162236155|gb|FC411963.1|FC411963
EST:     ATGATGGCAATTATGGTTCCGCTTCTATGTGCGATGTACTCTGCCTCCAG                         GCACTGTCTAAGCGGATACATTACGGCAAGTTCGTGGCAGAAGCGAAATTC
genomic: ATGATGGCAATTATGGTTCCGCTTCTATGTGCGATGTACTCTGCCTCCAGgtactatgct ... ttctctgcagGCACTGTCTAAGCGGATACATTACGGCAAGTTCGTGGCAGAAGCGAAATTC
EST: gi|162236154|gb|FC411962.1|FC411962
EST:     ATGATGGCAATTATGGTTCCGCTTCTATGTGCGATGTACTCTGCCTCCAG                         GCACTGTCTAAGCGGATACATTACGGCAAGTTCGTGGCAGAAGCGAAATTC
genomic: ATGATGGCAATTATGGTTCCGCTTCTATGTGCGATGTACTCTGCCTCCAGgtactatgct ... ttctctgcagGCACTGTCTAAGCGGATACATTACGGCAAGTTCGTGGCAGAAGCGAAATTC
EST: gi|162242780|gb|FC417550.1|FC417550
EST:     ATGATGGCAATTATGGTTCCGCTTCTATGTGCGATGTACTCTGCCTCCAG                         GCACTGTCTAAGCGGATACATTACGGCAAGTTCGTGGCAGAAGCGAAATTC
genomic: ATGATGGCAATTATGGTTCCGCTTCTATGTGCGATGTACTCTGCCTCCAGgtactatgct ... ttctctgcagGCACTGTCTAAGCGGATACATTACGGCAAGTTCGTGGCAGAAGCGAAATTC