Sequence
atgc intronic sequence ATGC exonic sequenceGTAACTTTCAACCATATGCTTCCGAACTTCAACGAATGTTGGTGGGACAGTATCATTCTTGATGTCTTCCTGTGCAACTGGATTGgtatgtcctgccgatctcgtagtttgcaagtttgttgatacaggaactgtttaattgttggattttagataattttatatattgttaggttgttagtttatccgaaatatagattatcgagtggttgataataatgttctctgaagattttgaaccgtaagctagcccaatgaaggcttacgttgaaatatgcag
Basic information
species | Physcomitrella patens |
transcript | PP1S13_364V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: PP1S13_364V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: AT1G15110.1 (Arabidopsis thaliana), 5'ss of exon 9
GTAACTTTCAACCATATGCTTCCGAACTTCAACGAATGTTGGTGGGACAGTATCATTCTTGATGTCTTCCTGTGCAACTGGATTGgtatgtcctgccgatctcgtagtttgcaagtttgttgatacaggaactgtttaattgttggattttagataattttatatattgttaggttgttagtttatccgaaatatagattatcgagtggttgataataatgttctctgaagattttgaaccgtaagctagcccaatgaaggcttacgttgaaatatgcag
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GTTACTTTTCGGCATATGTTACCAAATTTCAACGAGTGCTGGTGGGACAGTATTGTTCTTGATATCTTGATATGCAACTGGTTTGgtatgattcttaagc----taccttgctattctat--atgtagtgcttttaaacatgttatggat--aacagcttttcttgttttaatcatggtag---------------------------------------------------------------------------------------------------
upper sequence: PP1S13_364V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ13742 (Selaginella moellendorffii), 5'ss of exon 1
GTAACTTTCAACCATATGCTTCCGAACTTCAACGAATGTTGGTGGGACAGTATCATTCTTGATGTCTTCCTGTGCAACTGGATTGgtatgtcctgccgatctcgtagtttgcaagtttgttgatacaggaactgtttaattgttggattttagataattttatatattgttaggttgttagtttatccgaaatatagattatcgagtggttgataataatgttctctgaagattttgaaccgtaagctagcccaatgaaggcttacgttgaaatatgcag
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---------------ATGCTACCGAACTTCAATGAATGTTGGTGGGACAGTATCATTCTCGACGTTCTTATTTGCAACTGGTTTGgtacgtaattc----tcctttgtatgaaaatgtctggtttta---attctgtgagtcacag--------------------------------------------------------------------------------------------------------------------------------------
upper sequence: PP1S13_364V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ29180 (Selaginella moellendorffii), 5'ss of exon 1
GTAACTTTCAACCATATGCTTCCGAACTTCAACGAATGTTGGTGGGACAGTATCATTCTTGATGTCTTCCTGTGCAACTGGATTGgtatgtcctgccgatctcgtagtttgcaagtttgttgatacaggaactgtttaattgttggattttagataattttatatattgttaggttgttagtttatccgaaatatagattatcgagtggttgataataatgttctctgaagattttgaaccgtaagctagcccaatgaaggcttacgttgaaatatgcag
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---------------ATGCTACCGAACTTCAATGAATGTTGGTGGGACAGTATCATTCTCGACGTTCTTATTTGCAACTGGTTTGgtacgtaattc----tcctttgtatgaaaatgtctggtttta---attctgtgagccacag--------------------------------------------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208368637|gb|DC955164.1|DC955164EST: ATGTTGGTGGGACAGTATCATTCTTGATGTCTTCCTGTGCAACTGGATTG GAATTTGGGCTGGCATGAAGACAGTAAAATATTTTGATGGAAAGACTTACG
genomic: ATGTTGGTGGGACAGTATCATTCTTGATGTCTTCCTGTGCAACTGGATTGgtatgtcctg ... aaatatgcagGAATTTGGGCTGGCATGAAGACAGTAAAATATTTTGATGGAAAGACTTACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAACTTTCAACCATATGCTTCCGAACTTCAACGAATGTTGGTGGGACAGTATCATTCTTGATGTCTTCCTGTGCAACTGGATTGgtatgtcctgccgatctcgtagtttgcaagtttgttgatacaggaactgtttaattgttggattttagataattttatatattgttaggttgttagtttatccgaaatatagattatcgagtggttgataataatgttctctgaagattttgaaccgtaagctagcccaatgaaggcttacgttgaaatatgcag
- - - - - - - - - - - - - - - - - - - TGGTGG