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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCAAAACAAGCTGTCTCTGTTTTCGCAGACACACAGAGCAGCGAGATTAAAGACCGTATTTTTGACGAGTTTAACAGTTTATCCGTTGTATATCAACAGgtaaattcgtctttgcttattttctgttatacgggaccttaattatgttcacgcttgcaagttttgcagtagattgattcactagtttagtaggcgtgat...

Basic information

species Physcomitrella patens
transcript PP1S131_189V6.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S131_189V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GRMZM2G029077_T01 (Zea mays), 5'ss of exon 9
CGCAAAACAAGCTGTCTCTGTTTTCGCAGACACACAGAGCAGCGAGATTAAAGACCGTATTTTTGACGAGTTTAACAGTTTATCCGTTGTATATCAACAGgt----aaattcgtctttgcttattttctgttatacgggaccttaattatgttcacgcttgcaagttttgcagtagattgattcactagtttagtaggcgtgat
  | || |||||||||||||| || ||||||||||||||||| || || ||||| || || || || ||||| |||||| |||| |||||||||||  ||||    |||||  |||   || |     || || |       |||  ||||   ||  || |  | | |    |    |  |      |||| || | |   | 
TCCCAAGCAAGCTGTCTCTGTATTTGCAGACACACAGAGCAGTGAAATCAAAGATCGGATATTCGATGAGTTCAACAGTCTATCAGTTGTATATCAGAAGgtatgcaaattaatctgatctgaaccattgctaaatt---ttttacatatggagacctttacttgctattttatgcgattctgagtgtgtttggttgcccgca-

upper sequence: PP1S131_189V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: AC198725.4_FGT007 (Zea mays), 5'ss of exon 11
CGCAAAACAAGCTGTCTCTGTTTTCGCAGACACACAGAGCAGCGAGATTAAAGACCGTATTTTTGACGAGTTTAACAGTTTATCCGTTGTATATCAACAGgt----aaattcgtctttgcttattttctgttatacgggaccttaattatg----ttcacgcttgcaagttttgcagtagattgattcactagtttagtaggcgtgat
  | ||||||||||||||||| || ||||| ||||||||||| || |  ||||| || || ||||| ||||| |||||| |||| |||||||||||  ||||    |||||  ||||  || |  |  || || |    || |||  ||||    |   | ||||| | ||||     |   |||||  |   | |||   | ||   
TCCCAAACAAGCTGTCTCTGTATTTGCAGATACACAGAGCAGTGAAACCAAAGATCGGATATTTGATGAGTTCAACAGTCTATCAGTTGTATATCAGAAGgtatgcaaattaatcttatctgaactattgataaa---aactttacatatggagatcttcacttgcta-ttttatgtgattctgattatc--atatagcgtgtgtt--

upper sequence: PP1S131_189V6.1 (Physcomitrella patens), 5'ss of exon 8
lower sequence: Vv04s0008g03880.t01 (Vitis vinifera), 5'ss of exon 9
CGCAAAACAAGCTGTCTCTGTTTTCGCAGACACACAGAGCAGCGAGATTAAAGACCGTATTTTTGACGAGTTTAACAGTTTATCCGTTGTATATCAACAGgtaaattcgtctttgcttattttctgttatacgggaccttaattatgttcacgcttgcaagttttgcagtagattgattca--ctagtttagtaggcgtgat-
  |||| |||||||| || || || ||||| || || ||||| ||  | ||||| || || |||||||| ||||||||| |||| |||||||||||| ||||| ||    |  |   || | | |  | |  |   ||  || |   |||  | |      | ||    ||| ||   | |   || ||   | |     || 
TCCAAAGCAAGCTGTTTCAGTCTTTGCAGATACTCAAAGCAGTGAAGTCAAAGATCGCATATTTGACGAATTTAACAGTCTATCTGTTGTATATCAAAAGgtatatcaagcggtttctaatcttttctttttgtagcc--aagtgatttc-tgatcatcgatattaacatagtttacctaaaattacttccattgaaacaatt