1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGCGGTACGTGGCCAAGTTGGAGAATGGAACGATCTTTGAGAAGAACGGTCAGGATGGCGAGGAACTGTTCCAATTTGTCACTGATGAAGgtgtgtaccttaccccttgtaagactaatcagaagtgtggattcttcttgtatctccttagagtgctttacgttcgtgcagcttttttatggatgtttctcggtgacaaaccttgctggtttcctttttacag
species | Physcomitrella patens |
transcript | PP1S109_70V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAAGAACGGTCAGGATGGCGAGGAACTGTTCCAATTTGTCACTGATGAAG GACAAGTTATCGATGGTCTTGATAAGGCTGTGCTTACTATGAAGAAAAATGEST: gi|162160213|gb|FC337110.1|FC337110
genomic: GAAGAACGGTCAGGATGGCGAGGAACTGTTCCAATTTGTCACTGATGAAGgtgtgtacct ... ctttttacagGACAAGTTATCGATGGTCTTGATAAGGCTGTGCTTACTATGAAGAAAAATG
EST: GAAGAACGGTCAGGATGGCGAGGAACTGTTCCAATTTGTCACTGATGAAG GACAAGTTATCGATGGTCTTGATAAGGCTGTGCTTACTATGAAGAAAAATGEST: gi|67570302|gb|BJ943126.1|BJ943126
genomic: GAAGAACGGTCAGGATGGCGAGGAACTGTTCCAATTTGTCACTGATGAAGgtgtgtacct ... ctttttacagGACAAGTTATCGATGGTCTTGATAAGGCTGTGCTTACTATGAAGAAAAATG
EST: GAAGAACGGTCAGGATGGCGAGGAACTGTTCCAATTTGTCACTGATGAAG GACAAGTTATCGATGGTCTTGATAAGGCTGTGCTTACTATGAAGAAAAATGEST: gi|162199328|gb|FC373708.1|FC373708
genomic: GAAGAACGGTCAGGATGGCGAGGAACTGTTCCAATTTGTCACTGATGAAGgtgtgtacct ... ctttttacagGACAAGTTATCGATGGTCTTGATAAGGCTGTGCTTACTATGAAGAAAAATG
EST: GAAGAACGGTCAGGATGGCGAGGAACTGTTCCAATTTGTCACTGATGAAG GACAAGTTATCGATGGTCTTGATAAGGCTGTGCTTACTATGAAGAAAAATGEST: gi|162253928|gb|FC430601.1|FC430601
genomic: GAAGAACGGTCAGGATGGCGAGGAACTGTTCCAATTTGTCACTGATGAAGgtgtgtacct ... ctttttacagGACAAGTTATCGATGGTCTTGATAAGGCTGTGCTTACTATGAAGAAAAATG
EST: GAAGAACGGTCAGGATGGCGAGGAACTGTTCCAATTTGTCACTGATGAAG GACAAGTTATCGATGGTCTTGATAAGGCTGTGCTTACTATGAAGAAAAATGEST: gi|100435874|gb|BY979267.1|BY979267
genomic: GAAGAACGGTCAGGATGGCGAGGAACTGTTCCAATTTGTCACTGATGAAGgtgtgtacct ... ctttttacagGACAAGTTATCGATGGTCTTGATAAGGCTGTGCTTACTATGAAGAAAAATG
EST: GAAGAACGGTCAGGATGGCGAGGAACTGTTCCAATTTGTCACTGATGAAG GACAAGTTATCGATGGTCTTGATAAGGCTGTGCTTACTATGAAGAAAAATG
genomic: GAAGAACGGTCAGGATGGCGAGGAACTGTTCCAATTTGTCACTGATGAAGgtgtgtacct ... ctttttacagGACAAGTTATCGATGGTCTTGATAAGGCTGTGCTTACTATGAAGAAAAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCGGTACGTGGCCAAGTTGGAGAATGGAACGATCTTTGAGAAGAACGGTCAGGATGGCGAGGAACTGTTCCAATTTGTCACTGATGAAGgtgtgtaccttaccccttgtaagactaatcagaagtgtggattcttcttgtatctccttagagtgctttacgttcgtgcagcttttttatggatgtttctcggtgacaaaccttgctggtttcctttttacag
- - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - AGGATG