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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATATTCACAGCAAGCTGGTGTGCTACATTACTAAGGAGCCTATGAACGAAAACAACCCGCCTTTAGTATTGCCTAACGGCTATGTGTACAGTACCAAGgtttgctttttctgtgttcggctttttcggagcttcaaagtattcccttctgtcaagtcgatgtcttgattcagtaaacgaggctctcgagctgaacatt...

Basic information

species Physcomitrella patens
transcript PP1S101_201V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208361230|gb|DC957699.1|DC957699
EST:     AAAACAACCCGCCTTTAGTATTGCCTAACGGCTATGTGTACAGTACCAAG                         GCAATGGTACAGATGGCAATGGAGAACCAAGGCAAGATCACATGCCCAAGG
genomic: AAAACAACCCGCCTTTAGTATTGCCTAACGGCTATGTGTACAGTACCAAGgtttgctttt ... gtgtttgcagGCAATGGTACAGATGGCAATGGAGAACCAAGGCAAGATCACATGCCCAAGG
EST: gi|208368556|gb|DC947915.1|DC947915
EST:     AAAACAACCCGCCTTTAGTATTGCCTAACGGCTATGTGTACAGTACCAAG                         GCAATGGTACAGATGGCAATGGAGAACCAAGGCAAGATCACATGCCCAAGG
genomic: AAAACAACCCGCCTTTAGTATTGCCTAACGGCTATGTGTACAGTACCAAGgtttgctttt ... gtgtttgcagGCAATGGTACAGATGGCAATGGAGAACCAAGGCAAGATCACATGCCCAAGG
EST: gi|208366321|gb|DC947551.1|DC947551
EST:     AAAACAACCCGCCTTTAGTATTGCCTAACGGCTATGTGTACAGTACCAAG                         GCAATGGTACAGATGGCAATGGAGAACCAAGGCAAGATCACATGCCCAAGG
genomic: AAAACAACCCGCCTTTAGTATTGCCTAACGGCTATGTGTACAGTACCAAGgtttgctttt ... gtgtttgcagGCAATGGTACAGATGGCAATGGAGAACCAAGGCAAGATCACATGCCCAAGG
EST: gi|15326950|gb|BI487373.1|BI487373
EST:     AAAACAACCCGCCTTTAGTATTGCCTAACGGCTATGTGTACAGTACCAAG                         GCAATGGTACAGATGGCAATGGAGAACCAAGGCAAGATCACATGCCCAAGG
genomic: AAAACAACCCGCCTTTAGTATTGCCTAACGGCTATGTGTACAGTACCAAGgtttgctttt ... gtgtttgcagGCAATGGTACAGATGGCAATGGAGAACCAAGGCAAGATCACATGCCCAAGG
EST: gi|67694865|gb|BJ955098.1|BJ955098
EST:     AAAACAACCCGCCTTTAGTATTGCCTAACGGCTATGTGTACAGTACCAAG                         GCAATGGTACAGATGGCAATGGAGAACCAAGGCAAGATCACATGCCCAAGG
genomic: AAAACAACCCGCCTTTAGTATTGCCTAACGGCTATGTGTACAGTACCAAGgtttgctttt ... gtgtttgcagGCAATGGTACAGATGGCAATGGAGAACCAAGGCAAGATCACATGCCCAAGG