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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCCAATCAGTGTGATGTTTGGAATGTGCGCAATATTTTTGGCAGTGGCGGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttggattcgccctacccacctcacattattttggaaccgtttgtttacttgcgtatatgttacattcctcacagaaactagtaaaataaagatagtacgactatttgtgacgcactgagataagtcgtaacgagaccctgtttcatgttatgcag

Basic information

species Physcomitrella patens
transcript PP1S8_271V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162192969|gb|FC371952.1|FC371952
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCCTG
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCC-TG
EST: gi|162272122|gb|FC447916.1|FC447916
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
EST: gi|37851200|gb|BJ609208.1|BJ609208
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
EST: gi|18334427|gb|BJ166444.1|BJ166444
EST:     GGGTATCTTGCAGCGGCGTCTCNTNATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
EST: gi|208374375|gb|DC948407.1|DC948407
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
EST: gi|18334290|gb|BJ166307.1|BJ166307
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
EST: gi|18333333|gb|BJ165347.1|BJ165347
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
EST: gi|162160906|gb|FC336969.1|FC336969
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
EST: gi|208365737|gb|DC944165.1|DC944165
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
EST: gi|162160905|gb|FC336968.1|FC336968
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
EST: gi|162186224|gb|FC362156.1|FC362156
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
EST: gi|37824740|gb|BJ582806.1|BJ582806
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
EST: gi|37851199|gb|BJ609207.1|BJ609207
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
EST: gi|162187638|gb|FC364095.1|FC364095
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
EST: gi|162274079|gb|FC450151.1|FC450151
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
EST: gi|208356198|gb|DC946246.1|DC946246
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
EST: gi|37824742|gb|BJ582808.1|BJ582808
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
EST: gi|162192968|gb|FC371951.1|FC371951
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
EST: gi|162201894|gb|FC376892.1|FC376892
EST:     GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCA                         GGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA
genomic: GGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttgga ... tgttatgcagGGTCAGTGGAGACGTGGGCGACTGAAAAAGAAAGTGAAGCTGAGCCCCTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCCCAATCAGTGTGATGTTTGGAATGTGCGCAATATTTTTGGCAGTGGCGGGTATCTTGCAGCGGCGTCTCTTGATGGTCTCCGATAAGCACAGGAGCAgtgagttggattcgccctacccacctcacattattttggaaccgtttgtttacttgcgtatatgttacattcctcacagaaactagtaaaataaagatagtacgactatttgtgacgcactgagataagtcgtaacgagaccctgtttcatgttatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA