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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCGAGGACATCCTGCAAGAAAAACTAAGTTCTATCATGAAGAACTCACCCACCACTCTGGCTGTATTGGCTGCTGCCACCCACTTCAAGCTCCATCAAgttcgttccattatcccaagcttacgtgaagagttggccaaaaatggggttagactaggtgacgcatgttttgaagttattacaaattgcttccatagtttagcgacgagctgtgataggttacgcatccaatgaaggtgctaaaatctgttgttcaatatgcaatcgttttttggtggatgatgtgatactgcag

Basic information

species Physcomitrella patens
transcript PP1S89_154V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208388403|gb|DC957041.1|DC957041
EST:     CCACCACTCTGGCTGTATTGGCTGCTGCCACCCACTTCAAGCTCCATCAA                         AGGGCCAAGCATGTGTACACCGAAGCCAAGCGGGTACATGATTTTCGAGCT
genomic: CCACCACTCTGGCTGTATTGGCTGCTGCCACCCACTTCAAGCTCCATCAAgttcgttcca ... gatactgcagAGGGCCAAGCATGTGTACACCGAAGCCAAGCGGGTACATGATTTTCGAGCT
EST: gi|162272814|gb|FC448802.1|FC448802
EST:     CCACCACTCTGGCTGTATTGGCTGCTGCCACCCACTTCAAGCTCCATCAA                         AGGGCCAAGCATGTGTACACCGAAGCCAAGCGGGTACATGATTTTCGAGCT
genomic: CCACCACTCTGGCTGTATTGGCTGCTGCCACCCACTTCAAGCTCCATCAAgttcgttcca ... gatactgcagAGGGCCAAGCATGTGTACACCGAAGCCAAGCGGGTACATGATTTTCGAGCT
EST: gi|208385544|gb|DC956700.1|DC956700
EST:     CCACCACTCTGGCTGTATTGGCTGCTGCCACCCACTTCAAGCTCCATCAA                         AGGGCCAAGCATGTGTACACCGAAGCCAAGCGGGTACATGATTTTCGAGCT
genomic: CCACCACTCTGGCTGTATTGGCTGCTGCCACCCACTTCAAGCTCCATCAAgttcgttcca ... gatactgcagAGGGCCAAGCATGTGTACACCGAAGCCAAGCGGGTACATGATTTTCGAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATCGAGGACATCCTGCAAGAAAAACTAAGTTCTATCATGAAGAACTCACCCACCACTCTGGCTGTATTGGCTGCTGCCACCCACTTCAAGCTCCATCAAgttcgttccattatcccaagcttacgtgaagagttggccaaaaatggggttagactaggtgacgcatgttttgaagttattacaaattgcttccatagtttagcgacgagctgtgataggttacgcatccaatgaaggtgctaaaatctgttgttcaatatgcaatcgttttttggtggatgatgtgatactgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT