1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATGATCTAGACAACGTCACTCGGTTTCTAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaatttttccttctttctctccatattttcgcatcgattgattggtaggtttaccaacgtgagtttttaccattgcattagaactggtcggaatcgca...
species | Physcomitrella patens |
transcript | PP1S84_76V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCAEST: gi|208360945|gb|DC946634.1|DC946634
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
EST: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCAEST: gi|18339266|gb|BJ171293.1|BJ171293
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
EST: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCAEST: gi|162258880|gb|FC434887.1|FC434887
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
EST: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTTTCGTGTTCCCATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCAEST: gi|208372438|gb|DC952282.1|DC952282
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
EST: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCAEST: gi|37847781|gb|BJ605789.1|BJ605789
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
EST: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCAEST: gi|208375291|gb|DC945018.1|DC945018
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
EST: TAACGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCAEST: gi|18334585|gb|BJ166602.1|BJ166602
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
EST: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCAEST: gi|208365784|gb|DC951047.1|DC951047
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
EST: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCAEST: gi|18334591|gb|BJ166608.1|BJ166608
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
EST: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCAEST: gi|18334132|gb|BJ166148.1|BJ166148
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
EST: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCAEST: gi|208372580|gb|DC952357.1|DC952357
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
EST: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCAEST: gi|18340558|gb|BJ172586.1|BJ172586
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
EST: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCAEST: gi|15320383|gb|BI488392.1|BI488392
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
EST: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCAEST: gi|162182472|gb|FC357447.1|FC357447
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
EST: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCAEST: gi|162196646|gb|FC374936.1|FC374936
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
EST: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCAEST: gi|208367467|gb|DC955675.1|DC955675
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
EST: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCAEST: gi|37842276|gb|BJ600284.1|BJ600284
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
EST: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAG ACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
genomic: TAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaattttt ... cttgatgcagACCAGTATCGTGTTCACATTAGAGGAAGGACCAGGTGTTCTGTTCAAGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGATCTAGACAACGTCACTCGGTTTCTAATGCTCGCTCGAGAACCTATCATTCCAAGAACTGACAGACCATTCAAGgtgaatttttccttctttctctccatattttcgcatcgattgattggtaggtttaccaacgtgagtttttaccattgcattagaactggtcggaatcgca
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