1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAGCACGTAACCGCAACCTTGCATCAATTATTGCAACAAGATCGAACTTCTGCATTGGAGCTTCTCTTGgtattgttattacaaacaagttcatttgactttagttcgtttgattctaagtaagataagactagcaacaagtactcaaacgagatttgtgaaggttgag...
species | Physcomitrella patens |
transcript | PP1S83_135V6.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGCATCAATTATTGCAACAAGATCGAACTTCTGCATTGGAGCTTCTCTTG AGATGGCTACTTTCATATCGGACTCTTTTCACACAACAATGCTCEST: gi|67724841|gb|BJ975100.1|BJ975100
genomic: TGCATCAATTATTGCAACAAGATCGAACTTCTGCATTGGAGCTTCTCTTGgtattgttat ... aatgttgcagAGATGGCTACTTTCATATCGGACTCTTTTCACACAACAATGCTC
EST: TGCATCAATTATTGCAACAAGATCGAACTTCTGCATTGGAGCTTCTCTTG AGATGGCTACTTTCATATCGGACTCTTTTCACACAACAATGCTCEST: gi|162166404|gb|FC342386.1|FC342386
genomic: TGCATCAATTATTGCAACAAGATCGAACTTCTGCATTGGAGCTTCTCTTGgtattgttat ... aatgttgcagAGATGGCTACTTTCATATCGGACTCTTTTCACACAACAATGCTC
EST: TGCATCAATTATTGCAACAAGATCGAACTTCTGCATTGGAGCTTCTCTTG AGATGGCTACACTCATATCGGACTCTTTTCACACAACAATGCTC
genomic: TGCATCAATTATTGCAACAAGATCGAACTTCTGCATTGGAGCTTCTCTTGgtattgttat ... aatgttgcagAGATGGCTACTTTCATATCGGACTCTTTTCACACAACAATGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCACGTAACCGCAACCTTGCATCAATTATTGCAACAAGATCGAACTTCTGCATTGGAGCTTCTCTTGgtattgttattacaaacaagttcatttgactttagttcgtttgattctaagtaagataagactagcaacaagtactcaaacgagatttgtgaaggttgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT