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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGAATTTGATCGCGATGACGAGTTCTTTGCGACGGCGGGCGTATCACGGCGTATCAAAGTTTTTGATTTTTCAAGGgtattgcttatttctttttagaaatattagcagtacatgctttgatgcgtagcatctatcatcttgccgtggatgttgtattttcgtggcatcgaacattttgcgattcttatgtactgcctgacactcaatctacgactaatataattctggaatgaaacag

Basic information

species Physcomitrella patens
transcript PP1S81_234V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S81_234V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: Vv10s0523g00030.t01 (Vitis vinifera), 5'ss of exon 7
CATTGAATTTGATCGCGATGACGAGTTCTTTGCGACGGCGGGCGTATCACGGCGTATCAAAGTTTTTGATTTTTCAAGGgtattgcttatttctttttagaaatattagcagtacatgct-ttgatgcgtagcatctatcatcttgccgtggatgttg-tattttcgtggcatcgaacattttgcgattcttatgtactgcctgacactcaatctacgactaatataattctggaatgaaacag
 || ||||||||||| ||||| || || ||||| || || || || |||||||| |||||||||||||| |||||                 || | ||    |   | ||  | |||||  |      |||  | | | ||    |  |  |  ||| ||  |   |       |  |||| | |     ||  |                                                
TATAGAATTTGATCGAGATGATGAATTGTTTGCTACTGCTGGAGTTTCACGGCGGATCAAAGTTTTTGAGTTTTC-----------------CTCTgtaagggttgca-caacatatgctgctttcagatagattttgttattgcacgattcagcttgataaatctttaagcctaactatttagtgtgagctacatg-----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162183635|gb|FC359889.1|FC359889
EST:     TTGCGACGGCGGGCGTATCACGGCGTATCAAAGTTTTTGATTTTTCAAGG                         GTTGTAAATGATGTCGCAGACGTCCATTGTCCAGTAGTGGAGAT-CCCACA
genomic: TTGCGACGGCGGGCGTATCACGGCGTATCAAAGTTTTTGATTTTTCAAGGgtattgctta ... aatgaaacagGTTGTAAATGATGTCGCAGACGTCCATTGTCCAGTAGTGGAGATTCCCACA
EST: gi|162191463|gb|FC368207.1|FC368207
EST:     TTGCGACGGCGGGCGTATCACGGCGTATCAAAGTTTTTGATTTTTCAAGG                         GTTGTAAATGATGTCGCAGACGTCCATTGTCCAGTAGTGGAGATTCCCACA
genomic: TTGCGACGGCGGGCGTATCACGGCGTATCAAAGTTTTTGATTTTTCAAGGgtattgctta ... aatgaaacagGTTGTAAATGATGTCGCAGACGTCCATTGTCCAGTAGTGGAGATTCCCACA
EST: gi|162189555|gb|FC365777.1|FC365777
EST:     TTGCGACGGCGGGCGTATCACGGCGTATCAAAGTTTTTGATTTTTCAAGG                         GTTGTAAATGATGTCGCAGACGTCCATTGTCCAGTAGTGGAGATTCCCACA
genomic: TTGCGACGGCGGGCGTATCACGGCGTATCAAAGTTTTTGATTTTTCAAGGgtattgctta ... aatgaaacagGTTGTAAATGATGTCGCAGACGTCCATTGTCCAGTAGTGGAGATTCCCACA