Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAGCATGCTGTGGATTCGAGTGCGGCTATGGCTGCGAGGGTGGGTACCCTATAAGAGCCTGGAAATACTTCAAGCACTCCGGAGTTGTGACAAACAAGgtgtgccatcgttttctttggtgcagaagatatgaaggacttcgtttttttattggactcatttactgcattcggaaatcttcgtcatattctcaccaaaatcagtgtgtagttaactcttcgaaagacgtcattttagcttgagattcatactaaactattttttgatacctgattcttgtgcag

Basic information

species Physcomitrella patens
transcript PP1S7_406V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208400722|gb|DC904900.1|DC904900
EST:     CTATAAGAGCCTGGAAATACTTCAAGCACTCCGGAGTTGTGACAAACAAG                         TGTGATCCATACTTTGATCAGAAAGGCTGTGCTCACCCAGGCTGCTATCCT
genomic: CTATAAGAGCCTGGAAATACTTCAAGCACTCCGGAGTTGTGACAAACAAGgtgtgccatc ... tcttgtgcagTGTGATCCATACTTTGATCAGAAAGGCTGTGCTCACCCAGGCTGCTATCCT
EST: gi|162171829|gb|FC348979.1|FC348979
EST:     CTATAAGAGCCTGGAAATACTTCAAGCACTCCGGAGTTGTGACAAACAAG                         TGTGATCCATACTTTGATCAGAAAGGCTGTGCTCACCCAGGCTGCTATCCT
genomic: CTATAAGAGCCTGGAAATACTTCAAGCACTCCGGAGTTGTGACAAACAAGgtgtgccatc ... tcttgtgcagTGTGATCCATACTTTGATCAGAAAGGCTGTGCTCACCCAGGCTGCTATCCT
EST: gi|208377375|gb|DC906644.1|DC906644
EST:     CTATAAGAGCCTGGAAATACTTCAAGCACTCCGGAGTTGTGACAAACAAG                         TGTGATCCATACTTTGATCAGAAAGGCTGTGCTCACCCAGGCTGCTATCCT
genomic: CTATAAGAGCCTGGAAATACTTCAAGCACTCCGGAGTTGTGACAAACAAGgtgtgccatc ... tcttgtgcagTGTGATCCATACTTTGATCAGAAAGGCTGTGCTCACCCAGGCTGCTATCCT
EST: gi|162250070|gb|FC427379.1|FC427379
EST:     CCTGGAAATACTTCAAGCACTCCGGAGTTGTGACAAACAAG                         TGTGATCCATACTTTGATCAGAAAGGCTGTGCTCACCCAGGCTGCTATCCT
genomic: CCTGGAAATACTTCAAGCACTCCGGAGTTGTGACAAACAAGgtgtgccatc ... tcttgtgcagTGTGATCCATACTTTGATCAGAAAGGCTGTGCTCACCCAGGCTGCTATCCT
EST: gi|162195749|gb|FC371140.1|FC371140
EST:     CTATAAGAGCCTGGAAATACTTCAAGCACTCCGGAGTTGTGACAAACAAG                         TGTGATCCATACTTTGATCAGAAAGGCTGTGCTCACCCAGGCTGCTATCCT
genomic: CTATAAGAGCCTGGAAATACTTCAAGCACTCCGGAGTTGTGACAAACAAGgtgtgccatc ... tcttgtgcagTGTGATCCATACTTTGATCAGAAAGGCTGTGCTCACCCAGGCTGCTATCCT
EST: gi|100371973|gb|BY967643.1|BY967643
EST:     ATAAGAGCCTGGNAATACTTCAAGCACTCCGGAAGT-GTGANCAA-CAAG                         TGTGATCCATACTTTGATCAGAAAGGCTGTGCT
genomic: ATAAGAGCCTGGAAATACTTCAAGCACTCCGGA-GTTGTGA-CAAACAAGgtgtgccatc ... tcttgtgcagTGTGATCCATACTTTGATCAGAAAGGCTGTGCT
EST: gi|162162644|gb|FC338946.1|FC338946
EST:     CTATAAGAGCCTGGAAATACTTCAAGCACTCCGGAGTTGTGACAAACAAG                         TGTGATCCATACTTTGATCAGAAAGGCTGTGCTCACCCAGGCTGCTATCCT
genomic: CTATAAGAGCCTGGAAATACTTCAAGCACTCCGGAGTTGTGACAAACAAGgtgtgccatc ... tcttgtgcagTGTGATCCATACTTTGATCAGAAAGGCTGTGCTCACCCAGGCTGCTATCCT
EST: gi|19789964|gb|BQ041614.1|BQ041614
EST:     CTATAAGAGCCTGGAAATACTTCAAGCACTCCGGAGTTGTGACAAACAAG                         TGTGATCCATACTTTGATCAGAAAGGCTGTGCTCACCCAGGCTGCTATCCT
genomic: CTATAAGAGCCTGGAAATACTTCAAGCACTCCGGAGTTGTGACAAACAAGgtgtgccatc ... tcttgtgcagTGTGATCCATACTTTGATCAGAAAGGCTGTGCTCACCCAGGCTGCTATCCT
EST: gi|208397325|gb|DC908229.1|DC908229
EST:     CTATAAGAGCCTGGAAATACTTCAAGCACTCCGGAGTTGTGACAAACAAG                         TGTGATCCATACTTTGATCAGAAAGGCTGTGCTCACCCAGGCTGCTATCCT
genomic: CTATAAGAGCCTGGAAATACTTCAAGCACTCCGGAGTTGTGACAAACAAGgtgtgccatc ... tcttgtgcagTGTGATCCATACTTTGATCAGAAAGGCTGTGCTCACCCAGGCTGCTATCCT