1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTCGTAGAATCTACTGCAATGTTAGGAAAGGGGGATTTGCATCTCACAGGGCAGTTGGGGGATGTTATCAAAGAATCAGCTCACATTGCTCTCACTTGGgtaagaatcaccacaccatcatgcacccttgcttttaatcattcagggcatgaattccaccagtaatcaaccatttcgaatgatcgctcctgtccactggtacgtgagtaatattattaattgctgcatcatcttcag
species | Physcomitrella patens |
transcript | PP1S79_225V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGCAGTTGGGGGATGTTATCAAAGAATCAGCTCACATTGCTCTCACTTGG GTGCGCGCGAGGTCTGCAGAGCTGAAACTACCGGTTGCAGAGGCCGGGAGCEST: gi|162193251|gb|FC369972.1|FC369972
genomic: GGCAGTTGGGGGATGTTATCAAAGAATCAGCTCACATTGCTCTCACTTGGgtaagaatca ... tcatcttcagGTGCGCGCGAGGTCTGCAGAGCTGAAACTACCGGTTGCAGAGGCCGGGAGC
EST: GGCAGTTGGGGGATGTTATCAAAGAATCAGCTCACATTGCTCTCACTTGG GTGCGCGCGAGGTCTGCAGAGCTGAAACTACCGGTTGCAGAGGCCGGGAGCEST: gi|162216102|gb|FC392935.1|FC392935
genomic: GGCAGTTGGGGGATGTTATCAAAGAATCAGCTCACATTGCTCTCACTTGGgtaagaatca ... tcatcttcagGTGCGCGCGAGGTCTGCAGAGCTGAAACTACCGGTTGCAGAGGCCGGGAGC
EST: CAGTTGGGGGATGTTATCAAAGAATCAGCTCACATTGCTCTCACTTGG GTGCGCGCGAGGTCTGCAGAGCTGAAACTACCGGTTGCAGAGGCCGGGAGCEST: gi|162216103|gb|FC392936.1|FC392936
genomic: CAGTTGGGGGATGTTATCAAAGAATCAGCTCACATTGCTCTCACTTGGgtaagaatca ... tcatcttcagGTGCGCGCGAGGTCTGCAGAGCTGAAACTACCGGTTGCAGAGGCCGGGAGC
EST: GGCAGTTGGGGGATGTTATCAAAGAATCAGCTCACATTGCTCTCACTTGG GTGCGCGCGAGGTCTGCAGAGCTGAAACTACCGGTTGCAGAGGCCGGGAGCEST: gi|37834221|gb|BJ592233.1|BJ592233
genomic: GGCAGTTGGGGGATGTTATCAAAGAATCAGCTCACATTGCTCTCACTTGGgtaagaatca ... tcatcttcagGTGCGCGCGAGGTCTGCAGAGCTGAAACTACCGGTTGCAGAGGCCGGGAGC
EST: GGCAGTTGGGGGATGTTATCAAAGAATCAGCTCACATTGCTCTCACTTGG GTGCGCGCGAGGTCTGCAGAGCTGAAACTACCGGTTGCAGAGGCCGGGAGC
genomic: GGCAGTTGGGGGATGTTATCAAAGAATCAGCTCACATTGCTCTCACTTGGgtaagaatca ... tcatcttcagGTGCGCGCGAGGTCTGCAGAGCTGAAACTACCGGTTGCAGAGGCCGGGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCGTAGAATCTACTGCAATGTTAGGAAAGGGGGATTTGCATCTCACAGGGCAGTTGGGGGATGTTATCAAAGAATCAGCTCACATTGCTCTCACTTGGgtaagaatcaccacaccatcatgcacccttgcttttaatcattcagggcatgaattccaccagtaatcaaccatttcgaatgatcgctcctgtccactggtacgtgagtaatattattaattgctgcatcatcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA