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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCCAAAAGTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAGgttgatatttacacctgtaattatctattgtgtcggtgctctgtttcttctgtgcaactaaattttagtgctgaatgctaatttttttttattccatcct...

Basic information

species Physcomitrella patens
transcript PP1S78_4V6.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67725353|gb|BJ975612.1|BJ975612
EST:     GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAG                         ATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
genomic: GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAGgttgatattt ... tgccattcagATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
EST: gi|162277312|gb|FC453118.1|FC453118
EST:     GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAG                         ATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
genomic: GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAGgttgatattt ... tgccattcagATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
EST: gi|162268668|gb|FC445165.1|FC445165
EST:     GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAG                         ATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
genomic: GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAGgttgatattt ... tgccattcagATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
EST: gi|162268669|gb|FC445166.1|FC445166
EST:     GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAG                         ATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
genomic: GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAGgttgatattt ... tgccattcagATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
EST: gi|18334696|gb|BJ166713.1|BJ166713
EST:     GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAG                         ATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
genomic: GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAGgttgatattt ... tgccattcagATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
EST: gi|67695705|gb|BJ955938.1|BJ955938
EST:     AATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAG                         ATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
genomic: AATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAGgttgatattt ... tgccattcagATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
EST: gi|37852646|gb|BJ610654.1|BJ610654
EST:     GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAG                         ATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
genomic: GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAGgttgatattt ... tgccattcagATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
EST: gi|67726274|gb|BJ976533.1|BJ976533
EST:     GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAG                         ATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
genomic: GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAGgttgatattt ... tgccattcagATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
EST: gi|67508643|gb|BJ941504.1|BJ941504
EST:     GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAG                         ATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
genomic: GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAGgttgatattt ... tgccattcagATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
EST: gi|67725181|gb|BJ975440.1|BJ975440
EST:     GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAG                         ATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
genomic: GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAGgttgatattt ... tgccattcagATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
EST: gi|67724933|gb|BJ975192.1|BJ975192
EST:     GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAG                         ATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
genomic: GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAGgttgatattt ... tgccattcagATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
EST: gi|67695360|gb|BJ955593.1|BJ955593
EST:     GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAG                         ATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
genomic: GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAGgttgatattt ... tgccattcagATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
EST: gi|18335656|gb|BJ167676.1|BJ167676
EST:     GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAG                         ATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
genomic: GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAGgttgatattt ... tgccattcagATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
EST: gi|67572332|gb|BJ945156.1|BJ945156
EST:     GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAG                         ATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC
genomic: GTCAATACAAGGCAACACTACAACCTCACTTGGTGTGGTCTGTGGAACAGgttgatattt ... tgccattcagATGAAAGATAACCTTGAAGAGAAGAAGTTCCAAGTTATCGATGCACGCGGC