1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGCCTTAACCACTACACTTCCAGATTTGTAGCTGCCGGTACTCCTCCAGCGAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgttttgttctcaatgagtgtaatgattttttgcattgctcaggacgctactctttattgacgtgtgaacttgattcggtgttgcag
species | Physcomitrella patens |
transcript | PP1S76_8V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|37849841|gb|BJ607849.1|BJ607849
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGNCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|37853675|gb|BJ611683.1|BJ611683
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|37838648|gb|BJ596656.1|BJ596656
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|162216227|gb|FC392644.1|FC392644
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|162192369|gb|FC368583.1|FC368583
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|18332625|gb|BJ164638.1|BJ164638
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|67724750|gb|BJ975009.1|BJ975009
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|37848981|gb|BJ606989.1|BJ606989
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|162175399|gb|FC352325.1|FC352325
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|37830105|gb|BJ588117.1|BJ588117
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: TGGCCAGCAGGCTATTGGGAAGATCAGGCAAATGNTGTCTTCAG TGNCGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|162258356|gb|FC434283.1|FC434283
genomic: TGGCCAGCA-GCTATTGGGAAGATCAGGC-AATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|37849544|gb|BJ607552.1|BJ607552
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|18340077|gb|BJ172105.1|BJ172105
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|37844589|gb|BJ602597.1|BJ602597
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|208351275|gb|DC921554.1|DC921554
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|208398631|gb|DC920526.1|DC920526
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|162183971|gb|FC359341.1|FC359341
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|67694850|gb|BJ955083.1|BJ955083
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|37850732|gb|BJ608740.1|BJ608740
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|67727273|gb|BJ977532.1|BJ977532
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|208348147|gb|DC920938.1|DC920938
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|162224508|gb|FC399884.1|FC399884
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|37824942|gb|BJ583008.1|BJ583008
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|37850796|gb|BJ608804.1|BJ608804
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|208356146|gb|DC946236.1|DC946236
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGGEST: gi|37841120|gb|BJ599128.1|BJ599128
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
EST: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAG TGACGCGGAATGGAGAATTAATTGGAAATCGG
genomic: GAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgtt ... ggtgttgcagTGACGCGGAATGGAGAATTAATTGGAAATCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCTTAACCACTACACTTCCAGATTTGTAGCTGCCGGTACTCCTCCAGCGAATGCACTGGCCAGCAGCTATTGGGAAGATCAGGCAATGGTGTCTTCAGgtattctgttttgttctcaatgagtgtaatgattttttgcattgctcaggacgctactctttattgacgtgtgaacttgattcggtgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA