Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctcgttaaatgttactacgttgtttatgcctctcatcacatttactttgtacccgtagtattactctaaatttgacactgaactcagtttatg...

Basic information

species Physcomitrella patens
transcript PP1S74_140V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208376489|gb|DC922520.1|DC922520
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATTTACGGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208364850|gb|DC957887.1|DC957887
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208372243|gb|DC948046.1|DC948046
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|162162985|gb|FC338167.1|FC338167
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208356591|gb|DC922381.1|DC922381
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACGTCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|37839167|gb|BJ597175.1|BJ597175
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATNTACAGCGCCGGTTTNTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208383807|gb|DC928082.1|DC928082
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208386389|gb|DC937056.1|DC937056
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208370737|gb|DC936859.1|DC936859
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208372953|gb|DC940584.1|DC940584
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208345159|gb|DC925457.1|DC925457
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATNTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208391627|gb|DC938240.1|DC938240
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208360344|gb|DC930753.1|DC930753
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|162175919|gb|FC351597.1|FC351597
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|162227965|gb|FC404585.1|FC404585
EST:     AACAAATACAAGATCGACCAC-TGNAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: AACAAATACAAGATCGACCACTTG-AAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|162163035|gb|FC338425.1|FC338425
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208349412|gb|DC910429.1|DC910429
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208376730|gb|DC902925.1|DC902925
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208388767|gb|DC941776.1|DC941776
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|67704587|gb|BJ964820.1|BJ964820
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|37843958|gb|BJ601966.1|BJ601966
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATNTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208362330|gb|DC954576.1|DC954576
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|18326813|gb|BJ158813.1|BJ158813
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208347730|gb|DC925603.1|DC925603
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208400413|gb|DC908640.1|DC908640
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACNGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|162160597|gb|FC337172.1|FC337172
EST:     GAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: GAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208354863|gb|DC934367.1|DC934367
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|162227966|gb|FC404586.1|FC404586
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208386871|gb|DC941575.1|DC941575
EST:     CAACAAATACAAGATCGACCACTTGAANAAGCCAGAAAACTGGGCTTTCG                         TGGANAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208394555|gb|DC953594.1|DC953594
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208374223|gb|DC945269.1|DC945269
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|100377120|gb|BY968373.1|BY968373
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         GGGAGAAGGCAAAGGACATCTA
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTA
EST: gi|208356999|gb|DC930029.1|DC930029
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|162184644|gb|FC360842.1|FC360842
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208379780|gb|DC911665.1|DC911665
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|67720670|gb|BJ970929.1|BJ970929
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATNTACAGCGCCGGTTTNTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|67718979|gb|BJ969238.1|BJ969238
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|162184643|gb|FC360841.1|FC360841
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|67575908|gb|BJ948732.1|BJ948732
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208395695|gb|DC911816.1|DC911816
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|100383558|gb|BY950342.1|BY950342
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208353070|gb|DC926093.1|DC926093
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208368488|gb|DC947889.1|DC947889
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208369247|gb|DC944564.1|DC944564
EST:     CAACAAATACNAGATCGACCAC-TGAAG-AGNCAGAAAACTNGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208398364|gb|DC912321.1|DC912321
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208395850|gb|DC924260.1|DC924260
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATTTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208358332|gb|DC930717.1|DC930717
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|37841119|gb|BJ599127.1|BJ599127
EST:     TTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATTTACAGCGCCGGTTTNTTCCTGACTGTTTCAC
genomic: TTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|162160598|gb|FC337173.1|FC337173
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|67727318|gb|BJ977577.1|BJ977577
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208356504|gb|DC914338.1|DC914338
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|100426438|gb|BY958898.1|BY958898
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGGAGGGCAA-GTACATCTACAGCGCCGGTTTTCTTCCTGACTGTTTC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGG-CAAAGTACATCTACAGCGCCGGTTT-CTTCCTGACTGTTTC
EST: gi|208353472|gb|DC938707.1|DC938707
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208347297|gb|DC925321.1|DC925321
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATTTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|162175918|gb|FC351596.1|FC351596
EST:     AACAAATACAAGATCGACCAC-TGNAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: AACAAATACAAGATCGACCACTTG-AAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208394056|gb|DC957137.1|DC957137
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|100386323|gb|BY987990.1|BY987990
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208399501|gb|DC908498.1|DC908498
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACGTCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208346565|gb|DC916831.1|DC916831
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|18340220|gb|BJ172248.1|BJ172248
EST:     ACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: ACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208355282|gb|DC929771.1|DC929771
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGNCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208367374|gb|DC951292.1|DC951292
EST:     CAACAAATACAAGATCGACCACNTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|100388054|gb|BY988527.1|BY988527
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208390491|gb|DC933748.1|DC933748
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208356213|gb|DC957331.1|DC957331
EST:     CAACAAATACAAGATNGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATNTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|37845825|gb|BJ603833.1|BJ603833
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGTGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|100374167|gb|BY985695.1|BY985695
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208374190|gb|DC945236.1|DC945236
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|100429892|gb|BY978141.1|BY978141
EST:     CAACAAATACAAGATCGACCACTTGAAGAA-CCAGAAAACTGGGCTTTCG                         TGGAGA-GGCAAAGTACATCTACAGCGCCGG
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGG
EST: gi|208383873|gb|DC911527.1|DC911527
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208370618|gb|DC936134.1|DC936134
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|100370755|gb|BY948500.1|BY948500
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208358299|gb|DC939411.1|DC939411
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|100379883|gb|BY949992.1|BY949992
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAANACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGGTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
EST: gi|208394240|gb|DC933908.1|DC933908
EST:     CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCG                         TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC
genomic: CAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 30 (downstream exon)
Score: 22

GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctc ... ttgatgacagTGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCTTGGTAGCCAATCTTTCAGCCGCCAACAAATACAAGATCGACCACTTGAAGAAGCCAGAAAACTGGGCTTTCGgtgggatctcgttaaatgttactacgttgtttatgcctctcatcacatttactttgtacccgtagtattactctaaatttgacactgaactcagtttatg

- - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC