1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATCATGAGGGATCCAGATTCTGGTAATTCGCGAGGATTTGGCTTCATCAGCTACGATTCGTTTGAAGCTTCAGACTCTGCAATTGAGgtaagcttgatggatgccaatttcgtactttttctttattgaaatagggaagacgattttttgggtcaagtgagtgtcttgtaaatgactcgagtagagcacggcataagaacaggaaccgctaggttttcatcagtagtgttcgaattgtgcag
species | Physcomitrella patens |
transcript | PP1S70_254V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGGCTTCATCAGCTACGATTCGTTTGAAGCTTCAGACTCTGCAATTGAG GCCATGAACGGGCAATATTTGTGCAATCGGGCTATCACTGTCTCCTATGCTEST: gi|208375791|gb|DC936731.1|DC936731
genomic: TTGGCTTCATCAGCTACGATTCGTTTGAAGCTTCAGACTCTGCAATTGAGgtaagcttga ... aattgtgcagGCCATGAACGGGCAATATTTGTGCAATCGGGCTATCACTGTCTCCTATGCT
EST: TTGGCTTCATCAGCTACGATTCGTTTGAAGCTTCAGACTCTGCAATTGAG GCCATGAACGGGNCAATATTTGTGCAATCGGGCTATCACTGTCTCCTATGCEST: gi|208357964|gb|DC938835.1|DC938835
genomic: TTGGCTTCATCAGCTACGATTCGTTTGAAGCTTCAGACTCTGCAATTGAGgtaagcttga ... aattgtgcagGCCATGAACGGG-CAATATTTGTGCAATCGGGCTATCACTGTCTCCTATGC
EST: TTGGCTTCATCANCTACNATTCGTTTGAAGCTTCANACTCTGCAATTGAG GCCATGAACGGGCAATATTTGTGCAATCGGGCTATCACTGTCTCCTATGCTEST: gi|162171578|gb|FC347519.1|FC347519
genomic: TTGGCTTCATCAGCTACGATTCGTTTGAAGCTTCAGACTCTGCAATTGAGgtaagcttga ... aattgtgcagGCCATGAACGGGCAATATTTGTGCAATCGGGCTATCACTGTCTCCTATGCT
EST: TTGGCTTCATCAGCTACGATTCGTTTGAAGCTTCAGACTCTGCAATTGAG GCCATGAACGGGCAATATTTGTGCAATCGGGCTATCACTGTCTCCTATGCT
genomic: TTGGCTTCATCAGCTACGATTCGTTTGAAGCTTCAGACTCTGCAATTGAGgtaagcttga ... aattgtgcagGCCATGAACGGGCAATATTTGTGCAATCGGGCTATCACTGTCTCCTATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCATGAGGGATCCAGATTCTGGTAATTCGCGAGGATTTGGCTTCATCAGCTACGATTCGTTTGAAGCTTCAGACTCTGCAATTGAGgtaagcttgatggatgccaatttcgtactttttctttattgaaatagggaagacgattttttgggtcaagtgagtgtcttgtaaatgactcgagtagagcacggcataagaacaggaaccgctaggttttcatcagtagtgttcgaattgtgcag
- - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC