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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGACGCCAGTGCTAAAGGGTGGTCAATGGGGAGCTGTAGCCAGTCCAATCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAGgttggtgcacacactcattttctgtggttttcatttattatttgcaatatcattcaatacttcaagacacacgcaaaatatatatatatatatatatata...

Basic information

species Physcomitrella patens
transcript PP1S69_206V6.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162277931|gb|FC454062.1|FC454062
EST:     TCTTGATCACCCTCCTTTTCCTCTTTTTCAGGGGCATTCCACTTCTCGAG                         GCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTTTCGGGCTTATAAG
genomic: TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAGgttggtgcac ... cttcaagcagGCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAG
EST: gi|208374653|gb|DC948639.1|DC948639
EST:     TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAG                         GCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAG
genomic: TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAGgttggtgcac ... cttcaagcagGCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAG
EST: gi|162277932|gb|FC454063.1|FC454063
EST:     TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAG                         GCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAG
genomic: TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAGgttggtgcac ... cttcaagcagGCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAG
EST: gi|208361108|gb|DC946713.1|DC946713
EST:     TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAG                         GCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAG
genomic: TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAGgttggtgcac ... cttcaagcagGCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAG
EST: gi|208372267|gb|DC948070.1|DC948070
EST:     TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAG                         GCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAG
genomic: TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAGgttggtgcac ... cttcaagcagGCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAG
EST: gi|208364468|gb|DC958037.1|DC958037
EST:     TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAG                         GCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAG
genomic: TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAGgttggtgcac ... cttcaagcagGCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAG
EST: gi|208363913|gb|DC939562.1|DC939562
EST:     TCTTGATCACCCTCCTNCTCCTCTTTCTCAGTGGCATCCCACTTCTCGAG                         -CATCAGCTGATA
genomic: TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAGgttggtgcac ... cttcaagcagGCATCAGCTGATA
EST: gi|208374045|gb|DC948914.1|DC948914
EST:     TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAG                         GCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAG
genomic: TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAGgttggtgcac ... cttcaagcagGCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAG
EST: gi|208365275|gb|DC946820.1|DC946820
EST:     TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAG                         GCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAG
genomic: TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAGgttggtgcac ... cttcaagcagGCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAG
EST: gi|208373125|gb|DC948890.1|DC948890
EST:     TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAG                         GCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAG
genomic: TCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAGgttggtgcac ... cttcaagcagGCATCAGCTGATAAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCGACGCCAGTGCTAAAGGGTGGTCAATGGGGAGCTGTAGCCAGTCCAATCTTGATCACCCTCCTTCTCCTCTTTCTCAGTGGCATTCCACTTCTCGAGgttggtgcacacactcattttctgtggttttcatttattatttgcaatatcattcaatacttcaagacacacgcaaaatatatatatatatatatatata

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