1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GATCGAGTTCTGTATCAGGGAAAGAGTTGTGTTGATGGCTGACGAGGTTTACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAGgtatcgtgttgcaatgccattgctattctccttatgggtacctgagctcccttgtttcagaagttattatgcagtatttatctctgtgtgttgaaatcgtaggatatatctgttgtttttgtcttgtggtatgcag
species | Physcomitrella patens |
transcript | PP1S64_220V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAG GTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCTEST: gi|162160782|gb|FC336681.1|FC336681
genomic: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAGgtatcgtgtt ... tggtatgcagGTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCT
EST: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAG GTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGEST: gi|162252058|gb|FC428297.1|FC428297
genomic: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAGgtatcgtgtt ... tggtatgcagGTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGG
EST: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAG GTGCTTATGGGTATGGGACCTAGATATAGTTCEST: gi|162156210|gb|FC332585.1|FC332585
genomic: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAGgtatcgtgtt ... tggtatgcagGTGCTTATGGGTATGGGACCTAGATATAGTTC
EST: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAG GTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCTEST: gi|162153784|gb|FC329915.1|FC329915
genomic: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAGgtatcgtgtt ... tggtatgcagGTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCT
EST: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAG GTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCTEST: gi|162165158|gb|FC341153.1|FC341153
genomic: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAGgtatcgtgtt ... tggtatgcagGTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCT
EST: AAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAG GTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCTEST: gi|162170441|gb|FC347626.1|FC347626
genomic: AAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAGgtatcgtgtt ... tggtatgcagGTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCT
EST: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAG GTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCTEST: gi|6227378|gb|AW155977.1|AW155977
genomic: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAGgtatcgtgtt ... tggtatgcagGTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCT
EST: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAG GTGCTTTTGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTATTCEST: gi|162191349|gb|FC368145.1|FC368145
genomic: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAGgtatcgtgtt ... tggtatgcagGTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGT-TTC
EST: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAG GTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCTEST: gi|162246304|gb|FC421049.1|FC421049
genomic: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAGgtatcgtgtt ... tggtatgcagGTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCT
EST: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAG GTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCTEST: gi|162244637|gb|FC424604.1|FC424604
genomic: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAGgtatcgtgtt ... tggtatgcagGTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCT
EST: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAG GTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCTEST: gi|162188744|gb|FC364030.1|FC364030
genomic: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAGgtatcgtgtt ... tggtatgcagGTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCT
EST: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAG GTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCT
genomic: ACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAGgtatcgtgtt ... tggtatgcagGTGCTTATGGGTATGGGACCTAGATATAGTTCAGCCTTGGAGTTGGTTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCGAGTTCTGTATCAGGGAAAGAGTTGTGTTGATGGCTGACGAGGTTTACCAGCAAAACGTATATCAAGATGAGCGGCCCTTCATCAGCGCGAGAAAGgtatcgtgttgcaatgccattgctattctccttatgggtacctgagctcccttgtttcagaagttattatgcagtatttatctctgtgtgttgaaatcgtaggatatatctgttgtttttgtcttgtggtatgcag
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