1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCAAGGGGTTTGAAGGGGCTAATCCTTTAGATGCAGCTGCTCTGCTCGCTGAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaatatctaatctacgctttgtggttggacatggtccacttattcgttgcaaagtttgcagtctcgtctatttataccccgagtgctggagtta...
species | Physcomitrella patens |
transcript | PP1S62_236V6.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|162253970|gb|FC430214.1|FC430214
genomic: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|162202603|gb|FC378961.1|FC378961
genomic: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|37825246|gb|BJ583312.1|BJ583312
genomic: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|162196718|gb|FC373838.1|FC373838
genomic: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|19790576|gb|BQ041944.1|BQ041944
genomic: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|37826170|gb|BJ584182.1|BJ584182
genomic: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|37842259|gb|BJ600267.1|BJ600267
genomic: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: AGGATTGTGACGTGCTTATTCCCTGCTGCCCTCGGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|37839593|gb|BJ597601.1|BJ597601
genomic: AGGATTGTGACGTGCTTATT-CCTGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: GCTGCCCTCGGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGNGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|67697002|gb|BJ957235.1|BJ957235
genomic: GCTGCCCTCGGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|37827344|gb|BJ585356.1|BJ585356
genomic: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: GGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|37828278|gb|BJ586290.1|BJ586290
genomic: GGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: AGGATTGTGACGTGCTTATTCCNTGCTGCCCTCGGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|37852839|gb|BJ610847.1|BJ610847
genomic: AGGATTGTGACGTGCTTATTCC-TGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|37838997|gb|BJ597005.1|BJ597005
genomic: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: AGGATTGTGACGTGCTTATTCCCTGCTGCCCTCGGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|208378444|gb|DC923080.1|DC923080
genomic: AGGATTGTGACGTGCTTATT-CCTGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: GATTGTGACGTGCTTATTCCTGCTGCCCTCNGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|162162142|gb|FC337716.1|FC337716
genomic: GATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|162151269|gb|FC327723.1|FC327723
genomic: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|67696602|gb|BJ956835.1|BJ956835
genomic: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: GTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCAEST: gi|162196717|gb|FC373837.1|FC373837
genomic: GTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
EST: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGG TGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
genomic: GAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaat ... tgcattgcagTGAAACTGCCAAGGATGTGAGTGCGAAGTTCATCGTAGAGGCTGCAAATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAGGGGTTTGAAGGGGCTAATCCTTTAGATGCAGCTGCTCTGCTCGCTGAGGATTGTGACGTGCTTATTCCTGCTGCCCTCGGTGGTGTCATTAATGGgtagagaaatatctaatctacgctttgtggttggacatggtccacttattcgttgcaaagtttgcagtctcgtctatttataccccgagtgctggagtta
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC