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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGAGGATGTCGGAACTGGTCTTCTAACTTATCCGTTGCTCATGGCTTCTGATATCATACTATATCAAgtaaattatctacctcttctcactaatttttttacttgtatatgacgattagaaaattactagtaaaccaatcctgcgcgacgattgcaatcatggtctcttttcagtctcagagcttagttttgactctataagttacgttatggcag

Basic information

species Physcomitrella patens
transcript PP1S5_195V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S5_195V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: EFJ29194 (Selaginella moellendorffii), 5'ss of exon 5
GGCGAGGATGTCGGAACTGGTCTTCTAACTTATCCGTTGCTCATGGCTTCTGATATCATACTATATCAAgtaaattatctacctcttctcactaatttttttacttgtatatgacgattagaaaattactagtaaaccaatcctgcgcgacgattgcaatcatggtctcttttcagtctcagagcttagttttgactctataagttacgttatggcag
|| ||||| || |||||||| ||||||||||| || ||||||||||| || |||||  | || ||||| |||     | |   |  ||   |  ||||| ||  |   ||  || ||  | |                                                                                                
GGTGAGGACGTAGGAACTGGACTTCTAACTTACCCTTTGCTCATGGCATCAGATATACTGCTCTATCAGgtagtccttgtgtttgctccatcacattttgtttttctgattcga-gagaacag-----------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162159331|gb|FC335145.1|FC335145
EST:     GTCTTCTAACTTATCCGTTGCTCATGGCTTCTGATATCATACTATATCAA                         TCTGACCTTGTTCCTGTCGGAGAGGATCAGAGGCAACACCTCGAATTGACT
genomic: GTCTTCTAACTTATCCGTTGCTCATGGCTTCTGATATCATACTATATCAAgtaaattatc ... gttatggcagTCTGACCTTGTTCCTGTCGGAGAGGATCAGAGGCAACACCTCGAATTGACT
EST: gi|67571511|gb|BJ944335.1|BJ944335
EST:     GTCTTCTAACTTATCCGTTGCTCATGGCTTCTGATATCATACTATATCAA                         TCTGACCTTGTTCCTGTCGGAGAGGATCAGAGGCAACACCTCGAATTGACT
genomic: GTCTTCTAACTTATCCGTTGCTCATGGCTTCTGATATCATACTATATCAAgtaaattatc ... gttatggcagTCTGACCTTGTTCCTGTCGGAGAGGATCAGAGGCAACACCTCGAATTGACT
EST: gi|162232167|gb|FC407730.1|FC407730
EST:     GTCTTCTAACTTATCCGTTGCTCATGGCTTCTGATATCATACTATATCAA                         TCTGACCTTGTTCCTGTCGGAGAGGATCAGAGGCAACACCTCGAATTGACT
genomic: GTCTTCTAACTTATCCGTTGCTCATGGCTTCTGATATCATACTATATCAAgtaaattatc ... gttatggcagTCTGACCTTGTTCCTGTCGGAGAGGATCAGAGGCAACACCTCGAATTGACT