1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGTCGGAGCTATCAGTGTATATACGAGGCCCTGGTCAAGGATGAAACATCATCTTCTGATACTGCCATGGCAGTGGAAGGGCAGCCAGAGTGGGTTCCTgtaagtgtcttttggttgcttttgcttcgtcgatgttgtgtgggattatatcttttagatgacatctttgaagaatcattgtcctccgtttcccttttgattttggccataatattatatttacttgggatgggttggtgtctcag
species | Physcomitrella patens |
transcript | PP1S58_256V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CATCTTCTGATACTGCCATGGCAGTGGAAGGGCAGCCAGAGTGGGTTCCT ATTTTAAGGAAGATATGTTGGTACTTAGTTTTGGCGCCTCACGATCCCATGEST: gi|37823682|gb|BJ581748.1|BJ581748
genomic: CATCTTCTGATACTGCCATGGCAGTGGAAGGGCAGCCAGAGTGGGTTCCTgtaagtgtct ... ggtgtctcagATTTTAAGGAAGATATGTTGGTACTTAGTTTTGGCGCCTCACGATCCCATG
EST: CATCTTCTGATACTGCCATGGCAGTGGAAGGGCAGCCAGAGTGGGTTCCT ATTTTAAGGAAGATATGTTGGTACTTAGTTTTGGCGCCTCACGATCCCATGEST: gi|19784261|gb|BQ040146.1|BQ040146
genomic: CATCTTCTGATACTGCCATGGCAGTGGAAGGGCAGCCAGAGTGGGTTCCTgtaagtgtct ... ggtgtctcagATTTTAAGGAAGATATGTTGGTACTTAGTTTTGGCGCCTCACGATCCCATG
EST: TTCTGATACTGCCATGGCAGTGGAAGGGCAGCCAGAGTGGGTTCCT ATTTTAAGGAAGATATGTTGGTACTTAGTTTTGGCGCCTCACGATCCCATGEST: gi|162157314|gb|FC333143.1|FC333143
genomic: TTCTGATACTGCCATGGCAGTGGAAGGGCAGCCAGAGTGGGTTCCTgtaagtgtct ... ggtgtctcagATTTTAAGGAAGATATGTTGGTACTTAGTTTTGGCGCCTCACGATCCCATG
EST: CATCTTCTGATACTGCCATGGCAGAGCAAGGGCAGCCAGAGTGAGTTCCT ATTTTAAGGAAGATATGTTGGTACTTAGTTTTGGCGCCTEST: gi|162269558|gb|FC445114.1|FC445114
genomic: CATCTTCTGATACTGCCATGGCAGTGGAAGGGCAGCCAGAGTGGGTTCCTgtaagtgtct ... ggtgtctcagATTTTAAGGAAGATATGTTGGTACTTAGTTTTGGCGCCT
EST: CATCTTCTGATACTGCCATGGCAGTGGAAGGGCAGCCAGAGTGGGTTCCT ATTTTAAGGAAGATATGTTGGTACTTAGTTTTGGCGCCTCACGATCCCATGEST: gi|162226295|gb|FC403003.1|FC403003
genomic: CATCTTCTGATACTGCCATGGCAGTGGAAGGGCAGCCAGAGTGGGTTCCTgtaagtgtct ... ggtgtctcagATTTTAAGGAAGATATGTTGGTACTTAGTTTTGGCGCCTCACGATCCCATG
EST: CATCTTCTGATACTGCCATGGCAGTGGAAGGGCAGCCAGAGTGGGTTCCT ATTTTAAGGAAGATATGTTGGTACTTAGTTTTGGCGCCTCACGATCCCATGEST: gi|162225703|gb|FC401845.1|FC401845
genomic: CATCTTCTGATACTGCCATGGCAGTGGAAGGGCAGCCAGAGTGGGTTCCTgtaagtgtct ... ggtgtctcagATTTTAAGGAAGATATGTTGGTACTTAGTTTTGGCGCCTCACGATCCCATG
EST: CATCTTCTGATACTGCCATGGCAGTGGAAGGGCAGCCAGAGTGNGTTCCT ATTTTA-GGAAGATATGTTGGTACT
genomic: CATCTTCTGATACTGCCATGGCAGTGGAAGGGCAGCCAGAGTGGGTTCCTgtaagtgtct ... ggtgtctcagATTTTAAGGAAGATATGTTGGTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTCGGAGCTATCAGTGTATATACGAGGCCCTGGTCAAGGATGAAACATCATCTTCTGATACTGCCATGGCAGTGGAAGGGCAGCCAGAGTGGGTTCCTgtaagtgtcttttggttgcttttgcttcgtcgatgttgtgtgggattatatcttttagatgacatctttgaagaatcattgtcctccgtttcccttttgattttggccataatattatatttacttgggatgggttggtgtctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG