1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGTATGCCTGGCATGGCTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAGgcatgtcatcttcttgagctttgatgaaaacaagatgtttcatttgaaaagaatgagaacaagttctgtattattgcttatagctacattggctttgatgaagtcgctgatgtcggttatctgtgacttggcag
species | Physcomitrella patens |
transcript | PP1S58_148V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAAATAACCCACAG TTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAGEST: gi|162165067|gb|FC341621.1|FC341621
genomic: GAAATAACCCACAGgcatgtcatc ... gacttggcagTTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAG
EST: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAG TTTCAAGCCTTGAGGACAATGGTTCAAGCTAATCCTCAGATTCTTCAGEST: gi|208390218|gb|DC949486.1|DC949486
genomic: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAGgcatgtcatc ... gacttggcagTTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAG
EST: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAG TTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAGEST: gi|162165066|gb|FC341620.1|FC341620
genomic: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAGgcatgtcatc ... gacttggcagTTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAG
EST: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAG TTTCAAGCCTTGAGGACAATGGTTCAAGCTAATCCTCAGATTCTTCAGEST: gi|67726633|gb|BJ976892.1|BJ976892
genomic: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAGgcatgtcatc ... gacttggcagTTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAG
EST: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAG TTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAGEST: gi|67726679|gb|BJ976938.1|BJ976938
genomic: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAGgcatgtcatc ... gacttggcagTTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAG
EST: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAG TTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAGEST: gi|208374139|gb|DC952570.1|DC952570
genomic: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAGgcatgtcatc ... gacttggcagTTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAG
EST: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAG TTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAGEST: gi|22133334|gb|BQ827679.1|BQ827679
genomic: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAGgcatgtcatc ... gacttggcagTTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAG
EST: GAAATAACCCACAG TTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAGEST: gi|67726518|gb|BJ976777.1|BJ976777
genomic: GAAATAACCCACAGgcatgtcatc ... gacttggcagTTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAG
EST: GGAGGAGGGTGGTGCCGGAGCTTTNGGACTTCTTAAGAAATAACCCACAG TTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAGEST: gi|208362766|gb|DC950566.1|DC950566
genomic: GGAGGA-GGTGGTGCCGGAGCTTT-GGACTTCTTAAGAAATAACCCACAGgcatgtcatc ... gacttggcagTTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAG
EST: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAG TTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAGEST: gi|162260011|gb|FC435314.1|FC435314
genomic: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAGgcatgtcatc ... gacttggcagTTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAG
EST: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAG TTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAGEST: gi|67724052|gb|BJ974311.1|BJ974311
genomic: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAGgcatgtcatc ... gacttggcagTTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAG
EST: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAG TTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAGEST: gi|162200955|gb|FC377358.1|FC377358
genomic: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAGgcatgtcatc ... gacttggcagTTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAG
EST: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAG TTTCAAGCCTTGAGGACAATGGTTCAAGCTAATCCTCAGATTCTTCAGEST: gi|67720762|gb|BJ971021.1|BJ971021
genomic: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAGgcatgtcatc ... gacttggcagTTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAG
EST: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAG TTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAGEST: gi|162163441|gb|FC339975.1|FC339975
genomic: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAGgcatgtcatc ... gacttggcagTTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAG
EST: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAG TTTCAAGCCTTGAGGACAATGGTTCAAGCTAATCCTCAGATTCTTCAG
genomic: CTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAGgcatgtcatc ... gacttggcagTTTCAAGCCTTGAGGACAATGGTTCAAGCAAATCCTCAGATTCTTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTATGCCTGGCATGGCTGGAGGAGGTGGTGCCGGAGCTTTGGACTTCTTAAGAAATAACCCACAGgcatgtcatcttcttgagctttgatgaaaacaagatgtttcatttgaaaagaatgagaacaagttctgtattattgcttatagctacattggctttgatgaagtcgctgatgtcggttatctgtgacttggcag
- - - - - - - - TGGAGG
- - - - - - - - - GGAGGA
- - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA