1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATTTTACATATATCAGACATTGAAATAAAGGAGACAAAGTTGTTGGGGAATTCTCCTATCATAATAATTAATgtgagtatttattctcatgatcttaactggtattcacaatatatgatttgtgacagacgatgcgtacggctgtgagtttattagttggaaagtccttgat...
species | Physcomitrella patens |
transcript | PP1S56_221V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: -AATAAAGGAGACAAAGTTG-TGGGGAATTCTCCTATCATAATAATTAAT TTCCAAACTCAGCAAATTCATTGCGCTCGGGACAAAGCTGGGAATATTATTEST: gi|208367624|gb|DC943971.1|DC943971
genomic: AAATAAAGGAGACAAAGTTGTTGGGGAATTCTCCTATCATAATAATTAATgtgagtattt ... tttttgacagTTCCAAACTCAGCAAATTCATTGCGCTCGGGACAAAGCTGGGAATATTATT
EST: AAATAAAAGAGACAAAGTTGTTGGGGAATTCTCCTATCATAATAATTAAT TTCCAAACTCAGCAAATTCATTGCGCTCGGGACAAAGCTGGGAATATTATTEST: gi|37851558|gb|BJ609566.1|BJ609566
genomic: AAATAAAGGAGACAAAGTTGTTGGGGAATTCTCCTATCATAATAATTAATgtgagtattt ... tttttgacagTTCCAAACTCAGCAAATTCATTGCGCTCGGGACAAAGCTGGGAATATTATT
EST: TCATAATAATTAAT TTCCAAACTCAGCAAATTCATTGCGCTCGGGACAAAGCTGGGGAATATTATEST: gi|208370160|gb|DC951759.1|DC951759
genomic: TCATAATAATTAATgtgagtattt ... tttttgacagTTCCAAACTCAGCAAATTCATTGCGCTCGGGACAAAGCT-GGGAATATTAT
EST: ATTCTCCTATCATAATAATTAAT TTCCAAANTCAGCAAANTCATTGCGCTCGGGACAAAGCTGGGGAATATTAT
genomic: ATTCTCCTATCATAATAATTAATgtgagtattt ... tttttgacagTTCCAAACTCAGCAAATTCATTGCGCTCGGGACAAAGCT-GGGAATATTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTTACATATATCAGACATTGAAATAAAGGAGACAAAGTTGTTGGGGAATTCTCCTATCATAATAATTAATgtgagtatttattctcatgatcttaactggtattcacaatatatgatttgtgacagacgatgcgtacggctgtgagtttattagttggaaagtccttgat
- - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - AGGAGA