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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTAGAGCATATTCCTCAACTTGTTGAGAGGTCGATCGACGCCATAAAAATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcattggcgacgatcgtttttactgccttaaagttgtgagctccgcccttgtttgtgactgtgttgaggtcttcagtaaagtagttattcttcataaagtctggcaattgaagtggtgggataatgttttgcag

Basic information

species Physcomitrella patens
transcript PP1S55_159V6.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208365688|gb|DC944144.1|DC944144
EST:     AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: gi|162171977|gb|FC349257.1|FC349257
EST:     AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: gi|37841565|gb|BJ599573.1|BJ599573
EST:     AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: gi|162179521|gb|FC356561.1|FC356561
EST:     AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: gi|162158828|gb|FC335351.1|FC335351
EST:     AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCTTACGATGCCATTC
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: gi|162174063|gb|FC350578.1|FC350578
EST:     AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: gi|162266763|gb|FC442279.1|FC442279
EST:     AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: gi|37852089|gb|BJ610097.1|BJ610097
EST:     AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: gi|208393114|gb|DC929609.1|DC929609
EST:     AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTANTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAATGTGGACCCTACGATGCCATNC
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: gi|37842080|gb|BJ600088.1|BJ600088
EST:     AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: gi|162179520|gb|FC356560.1|FC356560
EST:     AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: gi|37846074|gb|BJ604082.1|BJ604082
EST:     AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: gi|162197969|gb|FC373984.1|FC373984
EST:     AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: gi|37841159|gb|BJ599167.1|BJ599167
EST:     AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: gi|162162076|gb|FC338867.1|FC338867
EST:     AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: gi|37852017|gb|BJ610025.1|BJ610025
EST:     AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
genomic: AATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: gi|37853578|gb|BJ611586.1|BJ611586
EST:     CCCTCATGGAAATGGGCCGTCTTGTAGTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
genomic: CCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
EST: gi|18341709|gb|BJ173744.1|BJ173744
EST:     TCTTGTAGTTCATG                         TCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC
genomic: TCTTGTAGTTCATGgtaaggcatt ... tgttttgcagTCGCTGATGGAAAACTTGGCTGGGAAGAGTGTGGACCCTACGATGCCATTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGTAGAGCATATTCCTCAACTTGTTGAGAGGTCGATCGACGCCATAAAAATGACTCCTGCTTCGTCCCTCATGGAAATGGGCCGTCTTGTAGTTCATGgtaaggcattggcgacgatcgtttttactgccttaaagttgtgagctccgcccttgtttgtgactgtgttgaggtcttcagtaaagtagttattcttcataaagtctggcaattgaagtggtgggataatgttttgcag

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