1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCCTCCTCCGAATCCTCCTCTTTCGCTTGCTCCAACTATGCAACATAGTGTATCAATAACTAAGGACGGAGTTCGAGAAGCACTTAATCGCCTCGTCAAGgtgagtatatctgcgtattgaatggcctcgcctgttttggatgaggtatgttgctaagaactagatggtgcctcatttgcgagtattatgtgtatgatgc...
species | Physcomitrella patens |
transcript | PP1S54_95V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TATCAATAACTAAGGACGGAGTTCGAGAAGCACTTAATCGCCTCGTCAAG AATGAGCATTTCATAGATATGGTGTACCGAGAGATGATGAATGCACACAATEST: gi|162205863|gb|FC381101.1|FC381101
genomic: TATCAATAACTAAGGACGGAGTTCGAGAAGCACTTAATCGCCTCGTCAAGgtgagtatat ... tgtgatgcagAATGAGCATTTCATAGATATGGTGTACCGAGAGATGATGAATGCACACAAT
EST: TATCAATAACTAAGGACGGAGTTCGAGAAGCACTTAATCGCCTCGTCAAG AATGAGCATTTCATAGATATGGTGTACCGAGAGATGATGAATGCACACAATEST: gi|208396544|gb|DC915856.1|DC915856
genomic: TATCAATAACTAAGGACGGAGTTCGAGAAGCACTTAATCGCCTCGTCAAGgtgagtatat ... tgtgatgcagAATGAGCATTTCATAGATATGGTGTACCGAGAGATGATGAATGCACACAAT
EST: TATCAATAACTAAGGACGGAGTTCGAGAAGCACTTAATCGCCTCGTCAAG AATGAGCATTTCATAGATATGGTGTACCGAGAGATGATGAATGCACACAAT
genomic: TATCAATAACTAAGGACGGAGTTCGAGAAGCACTTAATCGCCTCGTCAAGgtgagtatat ... tgtgatgcagAATGAGCATTTCATAGATATGGTGTACCGAGAGATGATGAATGCACACAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTCCTCCGAATCCTCCTCTTTCGCTTGCTCCAACTATGCAACATAGTGTATCAATAACTAAGGACGGAGTTCGAGAAGCACTTAATCGCCTCGTCAAGgtgagtatatctgcgtattgaatggcctcgcctgttttggatgaggtatgttgctaagaactagatggtgcctcatttgcgagtattatgtgtatgatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC