Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTTATTCTCCAAATGCTTATCGAGGGTTCGCACGTGAGTTCATTAAAGATCTCGAAGCTATCAGgttctgacgaacacaatttctctcgtcgatatgcctgtatctgtatgtacctgagaatccttataatttaacacattctgggtgtgttgatcag

Basic information

species Physcomitrella patens
transcript PP1S54_267V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S54_267V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: Vv18s0001g00440.t01 (Vitis vinifera), 5'ss of exon 8
GCACTTATTCTCCAAATGCTTATCGAGGGTTCGCACGTGAGTTCATTAAAGATCTCGAAGCTATCAGgttctgacg---aacacaatttctctcgtcgatatgcctgtatc-tgtatgtacctgaga-atccttataatttaacacattctgggt--gtgttgatcag----------------------------------------
||| |||||||||||| || ||||| || || || |||||||||||||||||| | |||   |||||||| |  |     |||| |||||    ||   |        ||  |  ||| |     |   |  |  |  |||   | | | |   |   || || ||||                                        
GCATTTATTCTCCAAACGCATATCGTGGTTTTGCTCGTGAGTTCATTAAAGATTTGGAAAGGATCAGgttgttgcctttgacactatttcagcagtgattggcatcacatagttcatgaaataatgctgttttcctgcttttgtagactttcacttgatgctg-tcagctattttcattttgacacctttccggttggttcattgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162160655|gb|FC337204.1|FC337204
EST:     GCTTATCGAGGGTTCGCACGTGAGTTCATTAAAGATCTCGAAGCTATCAG                         GCCGCAAGCAATTCTTGACATCATAAGATCTGGAGAAAGATTTAGGATAGA
genomic: GCTTATCGAGGGTTCGCACGTGAGTTCATTAAAGATCTCGAAGCTATCAGgttctgacga ... tgttgatcagGCCGCAAGCAATTCTTGACATCATAAGTTCTGGAGAAAGATTTAGGATAGA
EST: gi|208354247|gb|DC957439.1|DC957439
EST:     GCTTATCGAGGGTTCGCACGTGAGTTCATTAAAGATCTCGAAGCTATCAG                         GCCGCAAGCAATTCTTGACATCATAAGTTCTGGAGAAAGATTTAGGATAGA
genomic: GCTTATCGAGGGTTCGCACGTGAGTTCATTAAAGATCTCGAAGCTATCAGgttctgacga ... tgttgatcagGCCGCAAGCAATTCTTGACATCATAAGTTCTGGAGAAAGATTTAGGATAGA
EST: gi|37821355|gb|BJ579421.1|BJ579421
EST:     GCTTATCGAGGGTTCGCACGTGAGTTCATTAAAGATCTCGAAGCTATCAG                         GCCGCAAGCAATTCTTGACATCATAAGTTCTGGAGAAAGATTTAGGATAGA
genomic: GCTTATCGAGGGTTCGCACGTGAGTTCATTAAAGATCTCGAAGCTATCAGgttctgacga ... tgttgatcagGCCGCAAGCAATTCTTGACATCATAAGTTCTGGAGAAAGATTTAGGATAGA
EST: gi|208372809|gb|DC956210.1|DC956210
EST:     GCTTATCGAGGGTTCGCACGTGAGTTCATTAAAGATCTCGAAGCTATCAG                         GCCGCAAGCAATTCTTGACATCATAAGTTCTGGAGAAAGATTTAGGATAGA
genomic: GCTTATCGAGGGTTCGCACGTGAGTTCATTAAAGATCTCGAAGCTATCAGgttctgacga ... tgttgatcagGCCGCAAGCAATTCTTGACATCATAAGTTCTGGAGAAAGATTTAGGATAGA