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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGCTGGAGCTTTTTACAAGGGATTTTTGCCCAATTTCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAGgttagttactttgtggcatttgaatctttcctgtcggggtcttaaaaacgttactgatagtataatttgatcatttttctttgtgatcagtagattaactaagtgtttggatgtgttgcag

Basic information

species Physcomitrella patens
transcript PP1S54_186V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S54_186V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 8
GGTGCTGGAGCTTTTTACAAGGGATTTTTGCCCAATTTCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAGgttagttactttgtggcatttgaatctttcctgtcggggtcttaaaaacgttactgatagtataatttgatcatttttctttgtgatcagtagattaactaagtgtttggatgtgttgcag
||  ||   || || |||||||| ||| | || ||||| || || || || |||||||||||||| |||||| ||||||||||||||||       ||       | |||  || |  || |     |||  ||  ||| ||| |  |    ||||  |||  |  |   ||         | ||||   | |   |||||       
GGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAGgt--acagtttcaaattgtgtgatactcttatgcc----ccttttaattgtt-ctggtcttgc--tttgcacatggtggtgcatggctt-----tcaacttcatttccagatgt-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208374000|gb|DC944733.1|DC944733
EST:     TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAG                         ACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACCTGAGTTTCTGTTGT
genomic: TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAGgttagttact ... tgtgttgcagACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAAC-TGAGTTTCTGTTGT
EST: gi|208372592|gb|DC944599.1|DC944599
EST:     TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAG                         ACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTG
genomic: TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAGgttagttact ... tgtgttgcagACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTG
EST: gi|162230432|gb|FC407087.1|FC407087
EST:     TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAG                         ACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTG
genomic: TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAGgttagttact ... tgtgttgcagACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTG
EST: gi|162158108|gb|FC333903.1|FC333903
EST:     TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAG                         ACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTG
genomic: TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAGgttagttact ... tgtgttgcagACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTG
EST: gi|162272364|gb|FC449029.1|FC449029
EST:     TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAG                         ACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTG
genomic: TCGGTCGACTTGGTTCTTGGAACGTCATTATGTTTTTGACCTTGGAACAGgttagttact ... tgtgttgcagACCAAGAAGGCTTTCTTCCCTAAGGACGAGTAGAACTGAGTTTCTGTTGTG