1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAACATATTTAATGATGCTGGTGTCCCATGGAAAGAATACCGCTACTTTGACCCCAAAACTGTCGGCTTAGACTTCGATGGCATGATGGAAGACATTGAGgtagaagccaaacttagatcttaatgacgtcaagtgtgttcaccatatatttgatagcagcgatttacagcagtattcctttattgaggacacactatggctttgaaattgtgcag
species | Physcomitrella patens |
transcript | PP1S540_7V6.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACCCCAAAACTGTCGGCTTAGACTTCGATGGCATGATGGAAGACATTGAG AACGCACCTGAGGGTTCAATTATATTGTTGCACGGGTGTGCACACAACCCAEST: gi|100397833|gb|BY990424.1|BY990424
genomic: ACCCCAAAACTGTCGGCTTAGACTTCGATGGCATGATGGAAGACATTGAGgtagaagcca ... aattgtgcagAACGCACCTGAGGGTTCAATTATATTGTTGCACGGGTGTGCACACAACCCA
EST: ACCCCAAAACTGTCGGCTTAGACTTCGATGGCATGATGGAAGACATTGAG AACGCACCTNGAGGGT-CAATTATATTTGT-GCACGGGTGTGCACACAACCEST: gi|162172938|gb|FC348943.1|FC348943
genomic: ACCCCAAAACTGTCGGCTTAGACTTCGATGGCATGATGGAAGACATTGAGgtagaagcca ... aattgtgcagAACGCACCT-GAGGGTTCAATTATATT-GTTGCACGGGTGTGCACACAACC
EST: ACCCCAAAACTGTCGGCTTAGACTTCGATGGCATGATGGAAGACATTGAG AACGCACCTGAGGGTTCAATTATATTGTTGCACGGGTGTGCACACAACCCAEST: gi|208359935|gb|DC938956.1|DC938956
genomic: ACCCCAAAACTGTCGGCTTAGACTTCGATGGCATGATGGAAGACATTGAGgtagaagcca ... aattgtgcagAACGCACCTGAGGGTTCAATTATATTGTTGCACGGGTGTGCACACAACCCA
EST: ACCCCAAAACTGTCGGCTTAGACTTCGATGGCATGATGGAAGACATTGAG ANCGCACCTGAGGGTTCAATTATATTGTNGCACGGGTGTGCACACAACC-AEST: gi|162167595|gb|FC343740.1|FC343740
genomic: ACCCCAAAACTGTCGGCTTAGACTTCGATGGCATGATGGAAGACATTGAGgtagaagcca ... aattgtgcagAACGCACCTGAGGGTTCAATTATATTGTTGCACGGGTGTGCACACAACCCA
EST: ACCCCAAAACTGTCGGCTTAAACTTCGATGGCATGATGGAAGACATTGAG AACGCACCTGAGGGTTCAATTATATTGTTGCACGGGTGTGCACACEST: gi|100373109|gb|BY949215.1|BY949215
genomic: ACCCCAAAACTGTCGGCTTAGACTTCGATGGCATGATGGAAGACATTGAGgtagaagcca ... aattgtgcagAACGCACCTGAGGGTTCAATTATATTGTTGCACGGGTGTGCACAC
EST: ACCCCAAA-CTGTCGGCTTAGACTTCGATGGCATGATGGAAGACATTGAG AACGCACCTGAGGGEST: gi|208366815|gb|DC940129.1|DC940129
genomic: ACCCCAAAACTGTCGGCTTAGACTTCGATGGCATGATGGAAGACATTGAGgtagaagcca ... aattgtgcagAACGCACCTGAGGG
EST: ACCCCAAAACTGTCGGCTTAGACTTCGATGGCATGATGGAAGACATTGAG AACGCACCTGAGGGTTCAATTATATTGTTGCACGGGTGTGCACACAACCCA
genomic: ACCCCAAAACTGTCGGCTTAGACTTCGATGGCATGATGGAAGACATTGAGgtagaagcca ... aattgtgcagAACGCACCTGAGGGTTCAATTATATTGTTGCACGGGTGTGCACACAACCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACATATTTAATGATGCTGGTGTCCCATGGAAAGAATACCGCTACTTTGACCCCAAAACTGTCGGCTTAGACTTCGATGGCATGATGGAAGACATTGAGgtagaagccaaacttagatcttaatgacgtcaagtgtgttcaccatatatttgatagcagcgatttacagcagtattcctttattgaggacacactatggctttgaaattgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA