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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCCAGAGGAGTCGGTGACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatccatctgattgatttgtgctttttctttcatgtttttctttttattattttggtgcagagttgagtgaacaaaattatgcattgccaggcat...

Basic information

species Physcomitrella patens
transcript PP1S52_45V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208385483|gb|DC956667.1|DC956667
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|67727266|gb|BJ977525.1|BJ977525
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|208363380|gb|DC946978.1|DC946978
EST:     GGCGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|67724954|gb|BJ975213.1|BJ975213
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|208386909|gb|DC956906.1|DC956906
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|67721269|gb|BJ971528.1|BJ971528
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|208386836|gb|DC953503.1|DC953503
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|162183531|gb|FC359629.1|FC359629
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|162226789|gb|FC403822.1|FC403822
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|162254133|gb|FC429657.1|FC429657
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|208399439|gb|DC924869.1|DC924869
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|208394499|gb|DC953538.1|DC953538
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGCTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|208387574|gb|DC953316.1|DC953316
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|37851675|gb|BJ609683.1|BJ609683
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|208366252|gb|DC943812.1|DC943812
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|18337911|gb|BJ169935.1|BJ169935
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|162166325|gb|FC342918.1|FC342918
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|67725320|gb|BJ975579.1|BJ975579
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
EST: gi|37850094|gb|BJ608102.1|BJ608102
EST:     GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCG                         CTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG
genomic: GACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatcc ... tcttatccagCTATCTCAAATTCTTTCGGCTTCGGTGGGCACAACTCCTGCGTTGTGTTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACCCAGAGGAGTCGGTGACGTTCGATACTGTGCCAAATGTGAAGAAGCAGCACGAAGTTAACGTCGgtgagtatccatctgattgatttgtgctttttctttcatgtttttctttttattattttggtgcagagttgagtgaacaaaattatgcattgccaggcat

- - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaaa