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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTGAATGTTGATGCACTTCCTTTGGAGCAAATTGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaaggaatgttcagaaaatttgctagagcactttggtagattgttttttcacctattgttcgactgaataaagctgtagatggtgtagagctgatctatgtaagcttatatgaatcttgggttgtgctatttcag

Basic information

species Physcomitrella patens
transcript PP1S51_241V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162269245|gb|FC445802.1|FC445802
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|37834821|gb|BJ592833.1|BJ592833
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|37835319|gb|BJ593331.1|BJ593331
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|162186404|gb|FC362960.1|FC362960
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|162252751|gb|FC428788.1|FC428788
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTTTGGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|67700556|gb|BJ960789.1|BJ960789
EST:     GGACCTCTATTTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: GGACCTCTA-TTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|162232388|gb|FC408822.1|FC408822
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|162186405|gb|FC362961.1|FC362961
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|22132121|gb|BQ826991.1|BQ826991
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|22492339|gb|BU052262.1|BU052262
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|22491789|gb|BU051712.1|BU051712
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|37834965|gb|BJ592977.1|BJ592977
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|162243414|gb|FC425110.1|FC425110
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|67726581|gb|BJ976840.1|BJ976840
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|162269244|gb|FC445801.1|FC445801
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|37849296|gb|BJ607304.1|BJ607304
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|37841391|gb|BJ599399.1|BJ599399
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|22133223|gb|BQ827614.1|BQ827614
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTG
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTG
EST: gi|162252752|gb|FC428789.1|FC428789
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|37827317|gb|BJ585329.1|BJ585329
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|162233272|gb|FC409614.1|FC409614
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|162243413|gb|FC425109.1|FC425109
EST:     TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: TGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
EST: gi|162169969|gb|FC345909.1|FC345909
EST:     GAAGTGTTTCCTGCGAGAACAAACACAG                         AGTTTGTTGAGGTCTTCTTTCGTAATCACCTCAAAATGCGCGTGTGGGAAC
genomic: GAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 30 (downstream exon)
Score: 10

GGGTTGAATGTTGATGCACTTCCTTTGGAGCAAATTGGACCTCTATTTGAGCACCACGAAGTGTTTCCTGCGAGAACAAACACAGgtacgcaagg ... gctatttcagAGTTTGTTGAGGTCTTCTCTCGTAATCACCTCAAAATGCGCGTGTGGGAACGGGGCGCCG




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