Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCGAACAAATGTACTCAATGATGCTTTTCACATTTGGCATGATGGAGAATTTGGCACTATCAACAACTTCCGGTTAGGTCGCTTACCTAATATTCCTgtaagttctctgcttcctgatatagctggatcacatgtattagattgctctaaaaactgaatgtgtacaattaaatgttgattgtaagttcatttcatgatgtagaaatcccgttcattttgacgcttatctacatctataaagttgtacaatctccgcag

Basic information

species Physcomitrella patens
transcript PP1S51_193V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S51_193V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: Vv15s0046g00950.t01 (Vitis vinifera), 5'ss of exon 6
GAAGCGAACAAATGTACTCAATGATGCTTTTCACATTTGGCATGATGGAGAATTTGGCACTATCAACAACTTCCGGTTAGGTCGCTTACCTAATATTCCTgtaagttctctgcttcctgatatagctggatcacatgtattagattgctctaaaaactgaatgtgtacaattaaatgttgattgtaagttcatttcatgatgtagaaatcccgttcattttgacgcttatctacatctataaagttgtacaatctccgcag
|||| |||| |||||||| |||||||| || | |||||||||||||||||||||||| || || ||||| || ||| | || ||  | ||||| ||||| |||||   |||    |   |    | |   |     ||   ||  || |  |  |||  |   ||| |    |     |   || ||   ||||    |                                                              
GAAGAGAACTAATGTACTGAATGATGCCTTCCCCATTTGGCATGATGGAGAATTTGGAACAATTAACAATTTTCGGCTTGGACGACTTCCTAAAATTCCAgtaagaaatcttagcctccagtctgtttacttttgagtgagaggatgttgaatgaacatatcttgtgcccccatcccctccatg-aacagcattgtgagcc------------------------------------------------------------