1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TTGTGAAAACGGAGGCCCAGCTCCTGAAAGCTTGACCAATAAAATCTACGAAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAACgtacgcaaaattactctgtcgagttgtacttatttgaccattttttaaaagttcgatacaaatttcataattccaatcgatgaatttataaattctgacgctcaatttcttgacccaag
species | Physcomitrella patens |
transcript | PP1S4_12V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAAC GTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACCEST: gi|162159187|gb|FC334358.1|FC334358
genomic: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAACgtacgcaaaa ... ttgacccaagGTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACC
EST: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAAC GTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACCEST: gi|100375450|gb|BY948872.1|BY948872
genomic: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAACgtacgcaaaa ... ttgacccaagGTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACC
EST: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAAC GTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACCEST: gi|67568839|gb|BJ941663.1|BJ941663
genomic: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAACgtacgcaaaa ... ttgacccaagGTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACC
EST: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAAC GTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACCEST: gi|162175775|gb|FC352077.1|FC352077
genomic: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAACgtacgcaaaa ... ttgacccaagGTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACC
EST: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAAC GTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACCEST: gi|162198744|gb|FC374227.1|FC374227
genomic: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAACgtacgcaaaa ... ttgacccaagGTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACC
EST: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAAC GTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACCEST: gi|18348776|gb|BJ180825.1|BJ180825
genomic: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAACgtacgcaaaa ... ttgacccaagGTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACC
EST: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAAC GTTGACGTCACEST: gi|208351568|gb|DC909998.1|DC909998
genomic: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAACgtacgcaaaa ... ttgacccaagGTTGACGTCAC
EST: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAAC GTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACCEST: gi|162257953|gb|FC433839.1|FC433839
genomic: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAACgtacgcaaaa ... ttgacccaagGTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACC
EST: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAAC GTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACCEST: gi|162185024|gb|FC362470.1|FC362470
genomic: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAACgtacgcaaaa ... ttgacccaagGTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACC
EST: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAAC GTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACCEST: gi|100437911|gb|BY961558.1|BY961558
genomic: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAACgtacgcaaaa ... ttgacccaagGTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACC
EST: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAAC GTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACCEST: gi|67570443|gb|BJ943267.1|BJ943267
genomic: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAACgtacgcaaaa ... ttgacccaagGTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACC
EST: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAAC GTTGACGTCACEST: gi|162276463|gb|FC452466.1|FC452466
genomic: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAACgtacgcaaaa ... ttgacccaagGTTGACGTCAC
EST: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAAC GTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACC
genomic: AAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAACgtacgcaaaa ... ttgacccaagGTTGACGTCACCAAGATTGGTGTTACCAGTTTTGAGGGACCTGATGGCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGAAAACGGAGGCCCAGCTCCTGAAAGCTTGACCAATAAAATCTACGAAAACACCAAGAAAATCACGGCATATCATACCGCAGATGGCATCCCAAACgtacgcaaaattactctgtcgagttgtacttatttgaccattttttaaaagttcgatacaaatttcataattccaatcgatgaatttataaattctgacgctcaatttcttgacccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG