1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttttgaacctatttattgtcattagtttttatgccttgatcctgtcatggactcgaacttcgctttatgagcatttcatgtttttggctcttg...
species | Physcomitrella patens |
transcript | PP1S49_191V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAG GTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGGEST: gi|208382931|gb|DC923503.1|DC923503
genomic: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttt ... tccatcccagGTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGG
EST: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAG GTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGGEST: gi|162179726|gb|FC356317.1|FC356317
genomic: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttt ... tccatcccagGTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGG
EST: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAG GTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGGEST: gi|37851229|gb|BJ609237.1|BJ609237
genomic: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttt ... tccatcccagGTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGG
EST: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAG GTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGGEST: gi|18334691|gb|BJ166708.1|BJ166708
genomic: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttt ... tccatcccagGTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGG
EST: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAG GTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGGEST: gi|7148089|gb|AW510011.1|AW510011
genomic: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttt ... tccatcccagGTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGG
EST: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAG GTAAACGATACAGTCTACCAAATTCGCGAATGATGATTCATCAACCTCGTGEST: gi|162159944|gb|FC336197.1|FC336197
genomic: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttt ... tccatcccagGTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTC-TG
EST: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAG GTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGGEST: gi|18341257|gb|BJ173291.1|BJ173291
genomic: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttt ... tccatcccagGTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGG
EST: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAG GTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGGEST: gi|208381909|gb|DC923433.1|DC923433
genomic: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttt ... tccatcccagGTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGG
EST: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAG GTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGGEST: gi|67696515|gb|BJ956748.1|BJ956748
genomic: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttt ... tccatcccagGTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGG
EST: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAG GTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGGEST: gi|208380837|gb|DC923319.1|DC923319
genomic: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttt ... tccatcccagGTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGG
EST: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAG GTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGGEST: gi|37836163|gb|BJ594171.1|BJ594171
genomic: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttt ... tccatcccagGTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGG
EST: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAG GTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGGEST: gi|162268713|gb|FC445210.1|FC445210
genomic: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttt ... tccatcccagGTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGG
EST: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAG GTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGGEST: gi|208372169|gb|DC947972.1|DC947972
genomic: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttt ... tccatcccagGTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGG
EST: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAG GTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGGEST: gi|37851336|gb|BJ609344.1|BJ609344
genomic: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttt ... tccatcccagGTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGG
EST: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAG GTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGGEST: gi|162259738|gb|FC436744.1|FC436744
genomic: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttt ... tccatcccagGTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGG
EST: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAG GTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGG
genomic: TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttt ... tccatcccagGTAAACGATACAGTCTACCAAATTCGCGAATTATGATTCATCAACCTCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGGGAGCTTTTCTCCTTAGTGGTGGCACTAAAGgttcgctttttgaacctatttattgtcattagtttttatgccttgatcctgtcatggactcgaacttcgctttatgagcatttcatgtttttggctcttg
- - GGAGCT
- - GAGCTT
- - - - - - - - - - TGGTGG