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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAGgtttgtgctgacgctactagcaatcctaccattgtcaaagtttagagcaacaatatctgtttttctaagtaggtctgtgaagatgattgatccgtacacc...

Basic information

species Physcomitrella patens
transcript PP1S49_181V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GRMZM2G164797_T02 (Zea mays), 5'ss of exon 7
GCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAGgtttgtgctgacgctactagcaatcctacc-attgtcaaagtttagagcaacaatatctgtttttctaagtaggtctgtgaa--gatgattg-atccgtacacc
||||| |||||||| ||||| ||| ||||||| || |||||||||   ||||| ||||| ||||||||| |||| ||||  || |||||||||||     | ||  ||      || | |     ||  || | ||  |  | | | | |   || |||  | ||  |   | ||   ||  ||| |  | ||    
GCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgta---acagattctgaccttaaacgtgtttgtttacagaattctgcaccaaactttgacttattcatactaaattaattaactaatctttgtagtcttaaga-

upper sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GRMZM2G018971_T01 (Zea mays), 5'ss of exon 7
GCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAGgtttgtgctgacgctactagcaatcctacc-attgtcaaagtttagagcaacaat--atctgttt-ttctaagtaggtctgtgaaga--tgattgatccgtacacc
||||| |||||||| || || ||| ||||||| || |||||||||   ||||| ||||| ||||||||| |||| ||||  || |||||||||||     | ||  ||      || | |     ||  || | ||   | |||   |  | || | | | |||| | | | |   ||    ||  |  || | |    
GCCCTCGACACATTCAATACTGCAGTTGTTTCACCCATATATTACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAGgta---acagattctgaccttaaacgtgtttgtttacacaattcttaccaagctttgacctatctatactaaatcgatttactaaatcctgcatagtctgaag---

upper sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GRMZM2G120175_T04 (Zea mays), 5'ss of exon 7
GCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAGgtttgtgctgacgctactagcaatcctaccattgtcaaa-gtttagagcaacaatatctgtttttctaagtaggtctgtgaagatgattgatccgtacacc------------------------------------------------------------------------------------------
|| || ||||| || |||||||||||||| ||||| |||||||| || ||||||||| |  | || || || || || |  || |||||||||||   |  ||      ||     |  ||   || |      |||    |  ||||   |  |     | | |  | |  ||   |    |||   | ||                                                                                            
GCACTTGACACGTTCAACACGGCAATTGTATCTCCAATATATTATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAGgtaaattttgttttgcctttggcttatatatttattgcttatttcattctgcaat--ttactccctcatgcaccttttggaccctttcagatattttcatattgttgtatttgtttcatatgcattcctcagctctagtattatttgacaaaaccgtaaactgatgccatgctgtttaaatgtttgtgtag

upper sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GRMZM2G120175_T01 (Zea mays), 5'ss of exon 1
-------GCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAGgtttgtgctgacgctactagcaatcctaccattgtcaaa-gtttagagcaacaatatctgtttttctaagtaggtctgtgaagatgattgatccgtacacc------------------------------------------------------------------------------------------
       || || ||||| || |||||||||||||| ||||| |||||||| || ||||||||| |  | || || || || || |  || |||||||||||   |  ||      ||     |  ||   || |      |||    |  ||||   |  |     | | |  | |  ||   |    |||   | ||                                                                                            
GCTGTAGGCACTTGACACGTTCAACACGGCAATTGTATCTCCAATATATTATGTAATGTTCACAACTCTTACAATACTTGCCAGCGTCATAATGTTCAAGgtaaattttgttttgcctttggcttatatatttattgcttatttcattctgcaat--ttactccctcatgcaccttttggaccctttcagatattttcatattgttgtatttgtttcatatgcattcctcagctctagtattatttgacaaaaccgtaaactgatgccatgctgtttaaatgtttgtgtag

upper sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA04G00690.1 (Glycine max), 5'ss of exon 6
GCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAGgtttgtgctgacgctactagcaatcctaccattgtcaaagtttaga-gcaacaatatctgtttttctaagtaggtctgtgaagatgattga----tccgtacacc
|| ||||| ||||||||||| |||||||| |||||  ||||||| |||||||||||| |  |||||||  | || ||||  || ||||| |||||   |  ||||  || |   | || |    |  |       || | | ||     ||| || ||  |||   | || |   | || || |    || || ||  
GCACTGGATACATTTAACACCGCAATTGTCTCTCCCGTATATTATGTCATGTTCACAACTCTGACCATTATTGCTAGTGTGATAATGTTTAAGgt--atcatgaca-tattcatattcttggattcatttggtgctatatggaaggtcttcttttgttgaaagcttgactttttggttgctttaattttctgtgcag-

upper sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA16G00560.1 (Glycine max), 5'ss of exon 7
GCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAGgtttgtgctg--acgctactagca-------atcctaccattgtcaaagtttagagc--aacaatatctgtttttctaagtaggtctgtgaagatgattgatccgtacacc
|| ||||| || ||||| |||||| | || |||||||||||||| || ||||||||| |||| |||||  |||| |||| ||| ||||| |||||  ||  ||  ||   ||| | |       |  || ||    | |  | ||  |    || | | | | || |   |  |  || ||| |||   ||             
GCACTGGATACTTTTAATACGGCAGTGGTATCTCCTATATATTATGTTATGTTCACAACATTTACCATTGTGGCTAGTGTTATTATGTTTAAGgtaagttttgttacctaactggtatagttagacactgcctgcttaattgctttaattttaagattgtatattgtataatctgtgtttgtcaaggaaatgc-----------

upper sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA14G03790.1 (Glycine max), 5'ss of exon 7
GCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAGgtttgtgctgacgctactagcaatcc-taccattgtcaaagtttagagcaacaatatctgt-ttttctaagta--ggtctgtgaagatgattgatccgtacacc
|| || ||||| || ||||| |||||||| ||||||||||| || |||||||||||| || | || || || || ||||  || ||||| ||||| |   |      |  | ||| |   | | |    || |   |    |     | |  |  || |  ||| |    | |      |  | | || | ||||  
GCTCTTGACACCTTCAACACAGCAATTGTATCTCCTATATACTATGTCATGTTCACAACACTTACAATACTAGCCAGTGTAATAATGTTTAAGgtataatcaactagttttggcatttaatgctaaatgcataagatgtttctgttgtctacgaattgtacaagaacctatttacatttaaaaataatgcttacag-

upper sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA02G44980.2 (Glycine max), 5'ss of exon 6
GCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAGgtttgtgctgacgctactagcaatcc-taccattgtcaaagtttagagcaacaatat-ctgtttttctaagta--ggtctgtgaagatgattgatccgtacacc
|| || ||||| || ||||| |||||||| ||||||||||| || |||||||||||| || | || || || || ||||  || ||||| ||||| |   |      |  | ||| |   | | |    || |   |    |     | | | | || |  ||| |    | |      |  | | || | ||||  
GCTCTTGACACCTTCAACACAGCAATTGTATCTCCTATATACTATGTCATGTTCACAACACTTACAATACTAGCCAGTGTAATAATGTTTAAGgtataatcaattagttttggcatttaatgctaaatgcataagatgtttctgttgtctacggattgtacaagaacctatttacatttaaaaataatgcttacag-

upper sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 7
lower sequence: AT1G34470.1 (Arabidopsis thaliana), 5'ss of exon 7
GCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAGgtttgtgctgacgctactagcaatcctaccattgtcaaagtttagagcaacaatatctgtttttctaagtaggtctg-tgaagatgattgatccgtacacc----
|| || ||||| || ||||||||  | ||||| |||||||| || || ||||||||||||||||||||||| || ||||  |||||||| |||||    |   |   || || |  || |    || ||    | ||          || ||||||  ||| |||   |    |  ||  || ||   |         
GCGCTTGACACTTTCAACACGGCTGTAGTTTCACCTATATACTATGTTATGTTCACATCATTGACCATCCTAGCTAGTGTCATCATGTTTAAGgtgaaagtataatataataac--tcttggtgttttc----tcta----------atttgttttggtaactagagataacaacaattgttaatttatgtggaacag

upper sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 7
lower sequence: AT4G38730.1 (Arabidopsis thaliana), 5'ss of exon 7
GCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAGgtttgtgctgacgctactagcaatcctaccattgtcaaagtttagagcaacaatatctgtttttctaagtaggtctgtgaagatgattgatccgtacacc
|| ||||||||||| ||| | |||||||||||||| || ||||| || ||||||||| || | || ||  | || ||||| ||||||||||||||             |     | | | || |   | ||||     || ||  ||    || |||| |  | |     ||||     ||  ||   |||  
GCGCTGGACACATTCAACGCAGCAATTGTTTCTCCAATCTATTATGTGATGTTCACAACACTCACAATTGTCGCTAGTGCAATCATGTTCAAGgt-------------agagagatttcaacaaacattaaag-----agtaatgatcctcgtgtttcaagattgtcaaatgaatcacctttttcttaacag-

upper sequence: PP1S49_181V6.2 (Physcomitrella patens), 5'ss of exon 7
lower sequence: Vv03s0038g01940.t01 (Vitis vinifera), 5'ss of exon 7
GCCCTGGACACATTTAACACGGCAATTGTTTCTCCTATATATTACGTCATGTTCACATCATTGACCATCCTGGCGAGTGCTATCATGTTCAAGgtttgt-gctgacgctactagcaatcctaccattgtcaaagtttagagcaacaatatctgtttttctaagtaggtctgtgaagatgattgatccgt-acacc----------
|| ||||| ||||||||  | |||||||||||||| || ||||| |||||||||||| |  |||| ||    || ||||| || |||||||||||   | |||||  ||| |  |  |  |    ||    ||| |           |   | |  ||  ||| |    || | | |    | || | |  ||            
GCGCTGGATACATTTAATGCAGCAATTGTTTCTCCAATTTATTATGTCATGTTCACAACTCTGACTATAAGTGCAAGTGCAATAATGTTCAAGgtagattgctgaatctatttact-tggtgttgtttctgaagctgcattatcgggttcttatgattacaagaaataatgagcataaatcttattctttgcatgtgctctgcag