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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGTGGGTAACAACATCACGGCTGAAGCTACTCTCAATGACCTCAGCCTCGAATTGAAATGGAGCGACGTCGGCAATTTCCCCGTCAACCTCTTGCAGgtgtgtgtttaccatttactctgagctctattctgatgtaccgcaaggttgcgaaaatttcatcagcgctatcagagttggtcccactgtcagctgagcg...

Basic information

species Physcomitrella patens
transcript PP1S49_176V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37845401|gb|BJ603409.1|BJ603409
EST:     TCGAATTGAAATGGAGCGACGTCGGCAATTTCCCCGTCAACCTCTTGCAG                         CCTACACTGCGGACGGTCATTTCAAGGGTGATCCTTCCCATTTTGAACNNN
genomic: TCGAATTGAAATGGAGCGACGTCGGCAATTTCCCCGTCAACCTCTTGCAGgtgtgtgttt ... ttgtgtacagCCTACACTGCGGACGGTCATTTCAAGGGTGATCCTTCCCATTTTGAACAAA
EST: gi|18341746|gb|BJ173781.1|BJ173781
EST:     TCGAATTGAAATGGAGCGACGTCGGCAATTTCCCCGTCAACCTCTTGCAG                         CCTACACTGCGGACGGTCATTTCAAGGGTGATCCTTCCCATTTTGAACNNN
genomic: TCGAATTGAAATGGAGCGACGTCGGCAATTTCCCCGTCAACCTCTTGCAGgtgtgtgttt ... ttgtgtacagCCTACACTGCGGACGGTCATTTCAAGGGTGATCCTTCCCATTTTGAACAAA
EST: gi|162250364|gb|FC426018.1|FC426018
EST:     TCGAATTGAAATGGAGCGACGTCGGCAATTTCCCCGTCAACCTCTTGCAG                         CCTACACTGCGGACGGTCATTTCAAGGGTGATCCTTCCCATTTTGAACNNN
genomic: TCGAATTGAAATGGAGCGACGTCGGCAATTTCCCCGTCAACCTCTTGCAGgtgtgtgttt ... ttgtgtacagCCTACACTGCGGACGGTCATTTCAAGGGTGATCCTTCCCATTTTGAACAAA
EST: gi|37821330|gb|BJ579396.1|BJ579396
EST:     TCGAATTGAAATGGAGCGACGTCGGCAATTTCCCCGTCAACCTCTTGCAG                         CCTACACTGCGGACGGTCATTTCAAGGGTGATCCTTCCCATTTTGAACNNN
genomic: TCGAATTGAAATGGAGCGACGTCGGCAATTTCCCCGTCAACCTCTTGCAGgtgtgtgttt ... ttgtgtacagCCTACACTGCGGACGGTCATTTCAAGGGTGATCCTTCCCATTTTGAACAAA
EST: gi|162194091|gb|FC370266.1|FC370266
EST:     TCGAATTGAAATGGAGCGACGTCGGCAATTTCCCCGTCAACCTCTTGCAG                         CCTACACTGCGGACGGTCATTTCAAGGGTGATCCTTCCCATTTTGAACNNN
genomic: TCGAATTGAAATGGAGCGACGTCGGCAATTTCCCCGTCAACCTCTTGCAGgtgtgtgttt ... ttgtgtacagCCTACACTGCGGACGGTCATTTCAAGGGTGATCCTTCCCATTTTGAACAAA