1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGCTGCTTTCAACCTTCTGGTTACTCAAGAAGACAAAAGGATCATGCGAAGTATTGAGCAGCACTTTAACAGAAACGTTCCTGAGgtagtgctctagataatttgtttgaattgaggcactactctcctagctttggctcgcttgtgtataatcgtttgtttctttgtttaagcttgtagatctg...
species | Physcomitrella patens |
transcript | PP1S492_4V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAAGGATCATGCGAAGTATTGAGCAGCACTTTAACAGAGACGTTCCTGAG GTGGCTTGGGACAATGAGGAAGGTATTGAGCACGTATTGAAGGATGCAGGCEST: gi|67727778|gb|BJ978037.1|BJ978037
genomic: AAAGGATCATGCGAAGTATTGAGCAGCACTTTAACAGAAACGTTCCTGAGgtagtgctct ... cttattacagGTGGCTTGGGACAATGAGGAAGGTATTGAGCACGTATTGAAGGATGCAGGC
EST: AAAGGATCATGCGAAGTATTGAGCAGCACTTTAACAGAAACGTTCCTGAG GTGGCTTGGGACAATGAGGAAGGTATTGAGCACGTATTGAAGGATGCAGGCEST: gi|162169355|gb|FC345517.1|FC345517
genomic: AAAGGATCATGCGAAGTATTGAGCAGCACTTTAACAGAAACGTTCCTGAGgtagtgctct ... cttattacagGTGGCTTGGGACAATGAGGAAGGTATTGAGCACGTATTGAAGGATGCAGGC
EST: AAAGGATCATGCGAAGTATTGAGCAGCACTTTAACAGAAACGTTCCTGAG GTGGCTTGGGACAATGAGGAAGGTATTGAGCACGTATTGAAGGATGCAGGC
genomic: AAAGGATCATGCGAAGTATTGAGCAGCACTTTAACAGAAACGTTCCTGAGgtagtgctct ... cttattacagGTGGCTTGGGACAATGAGGAAGGTATTGAGCACGTATTGAAGGATGCAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTGCTTTCAACCTTCTGGTTACTCAAGAAGACAAAAGGATCATGCGAAGTATTGAGCAGCACTTTAACAGAAACGTTCCTGAGgtagtgctctagataatttgtttgaattgaggcactactctcctagctttggctcgcttgtgtataatcgtttgtttctttgtttaagcttgtagatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG