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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGGAATTTTGGGTCCTATAGACCCGGAGCTTTTAACCAAAGGGCGTGACACTCACAAGTTTTTTACCAAGAATCATATGCTTTATGAACGGAATCAGgtgcgatgtggttgaatgtgcccagcttaagtttgacttttctatacgtatttcgagtacttttgaaactctagtttacagtgcacactctttcagatat...

Basic information

species Physcomitrella patens
transcript PP1S47_312V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S47_312V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 6
GGTTGGAATTTTGGGTCCTATAGACCCGGAGCTTTTAACCAAAGGGCGTGACACTCACAAGTTTTTTACCAAGAATCATATGCTTTATGAACGGAATCAGgtgcgatgtggttgaatgtgcccagcttaagtttgacttttctatacgtatttcgagtacttttgaaactctagtttacagtgcacactctttcagatat---
| |||| ||  | || || || || |  |   |  |  | ||||| || || ||  | ||||  || || || |||||||||||||||||||||||||||||  ||  |  ||   | |     |   |   || |     |  | | ||   | ||| |||   | || ||   | |  |   | | | | | | | ||   
GATTGGGATCATTGGCCCAATTGATCAAGGTTTGCTTGCTAAAGGACGGGATACATATAAGTACTTCACAAAAAATCATATGCTTTATGAACGGAATCAGgtaagaatt--ttatttctaatttgaggagtgttaagaacgcattccctaacac-agtccttccaatacgctctctaattggttaaaatttattaaaaattat

upper sequence: PP1S47_312V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 6
GGTTGGAATTTTGGGTCCTATAGACCCGGAGCTTTTAACCAAAGGGCGTGACACTCACAAGTTTTTTACCAAGAATCATATGCTTTATGAACGGAATCAGgtgcgatgt---ggttgaatgtgcccagcttaagtttgacttttctatacgtatttcgagtacttttgaaactctagtttacagtgcacactctttcagatat---
| |||| ||  | || || || || |  |   |  |  | ||||  || || ||  ||||||  || || || |||||||||||||||||||| ||||||||  ||  |     || ||| ||   ||  | |     || || |||||   ||    ||| |||   | || ||   | |  |   | | |  || | |  |   
GATTGGTATAATTGGCCCAATTGATCAAGGTTTGCTTGCTAAAGCACGGGATACATACAAGTACTTCACAAAAAATCATATGCTTTATGAACGAAATCAGgtaagaattttatttttaatttgaggagtgttaagaacacatt-ctata-acat----agtccttcaaatacactcactaattggttaaatttattaaaaattata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162179956|gb|FC356027.1|FC356027
EST:     ACACTCACAAGTTTTTTACCAAGAATCATATGCTTTATGAACGGAATCAG                         GATTCTGACCAACTCGAGTACCTGCTACCAAAGAAGACATCTCTGGCCCAT
genomic: ACACTCACAAGTTTTTTACCAAGAATCATATGCTTTATGAACGGAATCAGgtgcgatgtg ... tggttgacagGATTCTGACCAACTCGAGTACCTGCTACCAAAGAAGACATCTCTGGCCCAT
EST: gi|162162553|gb|FC338647.1|FC338647
EST:     ACACTCACAAGTTTTTTACCAAGAATCATATGCTTTATGAACGGAATCAN                         GATTCTGACCAACTCGAGTACCTGCTA
genomic: ACACTCACAAGTTTTTTACCAAGAATCATATGCTTTATGAACGGAATCAGgtgcgatgtg ... tggttgacagGATTCTGACCAACTCGAGTACCTGCTA