1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTAAACACTGTTGTACGAGAGACTACTGGGGAGTATCAGGGCTATAACACCGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAGgtattaagacttttatctgtttttagtgtcacaaaagtcaaagaatgatcgtggttttaggtagagaatcggagctggaaacagccgttcatgtcttgat...
species | Physcomitrella patens |
transcript | PP1S47_18V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAG GGCTCGCTAACAATGATGAAACACCATTGAAAGGGCA-GCTGTTTGTAGTGEST: gi|162169731|gb|FC345268.1|FC345268
genomic: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAGgtattaagac ... tttcttgtagGGCTCGCTAACAATGATGAAACACCATTGAAAGG-CAAGCTGTTTGTAGTG
EST: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAG GGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGAEST: gi|162214492|gb|FC391459.1|FC391459
genomic: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAGgtattaagac ... tttcttgtagGGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGA
EST: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAG GGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGAEST: gi|162159094|gb|FC334889.1|FC334889
genomic: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAGgtattaagac ... tttcttgtagGGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGA
EST: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAG GGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGAEST: gi|162209036|gb|FC385588.1|FC385588
genomic: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAGgtattaagac ... tttcttgtagGGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGA
EST: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAG GGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGA
genomic: CGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAGgtattaagac ... tttcttgtagGGCTCGCTAACAATGATGAAACACCATTGAAAGGCAAGCTGTTTGTAGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAACACTGTTGTACGAGAGACTACTGGGGAGTATCAGGGCTATAACACCGATTGTGAGGGTGCCCTCTCAGCTATTGAGAAAGGACTTCGTCATTCAGgtattaagacttttatctgtttttagtgtcacaaaagtcaaagaatgatcgtggttttaggtagagaatcggagctggaaacagccgttcatgtcttgat
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