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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTACTGACGGCCTCTACGAAGGCATTGCCATTGGTGGTGATGTCTATCCTGGGTCAACGCTTTCGGATCATGTTTTGCGCTTCAACAACATTCCACAGgtatccgtttctgactgcgaattgtatgatcgctcatgcaggatccaggagccaagtttattacatcgtgaatgtaatttctattttgaatattctttat...

Basic information

species Physcomitrella patens
transcript PP1S46_63V6.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S46_63V6.4 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA17G03700.1 (Glycine max), 5'ss of exon 7
TGTTACTGACGGCCTCTACGAAGGCATTGCCATTGGTGGTGATGTCTATCCTGGGTCAACGCTTTCGGATCATGTTTTGCGCTTCAACAACATTCCACAGgta----tccgtttctgact-gcgaattgtatg----atc----gctcatgcagga-tccaggag---ccaagtttat---tacatcgtgaatg--taatttctattttgaatattctttat
                       |||||||||||||||| ||||| |  || || || || ||||| || ||||||||||| || |||||||| |||||||||    | |  || |  || | | | |||||     |||     |||||  || | | ||   |      ||| | |   |   | |||||||   | ||| |||||  | ||  | | | 
-----------------------GCATTGCCATTGGTGGAGATGTTTTCCCAGGTTCCACACTTTCTGACCATGTTTTGCGGTTTAACAACATACCACAGgtaaaatttcacttttatcttgggtactgtatataatatctgcaactcattaagaactgcaaatgatttggagtatgtccttttcttgtgaatgatcagtttgtatttacattaaacctcag

upper sequence: PP1S46_63V6.4 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA07G36840.1 (Glycine max), 5'ss of exon 9
TGTTACTGACGGCCTCTACGAAGGCATTGCCATTGGTGGTGATGTCTATCCTGGGTCAACGCTTTCGGATCATGTTTTGCGCTTCAACAACATTCCACAGgtat----ccgtttctgactgcgaattgtatgatcgctcatgcaggatccaggagccaagtttattacatcgtgaatgtaatttctat-tttgaatattctttat
                       | |||||||||||||| ||||| |  || || || || ||||| || ||||||||||| || |||||||| |||||||||      |  || |  |||| | |  | | |   ||    ||  |    ||||   |  | |||   | |||||||    |||| | ||||  |  ||   | 
-----------------------GAATTGCCATTGGTGGAGATGTTTTCCCAGGCTCCACACTTTCTGACCATGTTTTGCGGTTTAACAACATACCACAGgtagaatatcacttttatctgcaactcat-taagaactgc--caacaatttggagtata--tcattttcttgtgaatgatcattctgtatttgtgtggtcaagag

upper sequence: PP1S46_63V6.4 (Physcomitrella patens), 5'ss of exon 7
lower sequence: Vv05s0077g00950.t01 (Vitis vinifera), 5'ss of exon 8
TGTTACTGACGGCCTCTACGAAGGCATTGCCATTGGTGGTGATGTCTATCCTGGGTCAACGCTTTCGGATCATGTTTTGCGCTTCAACAACATTCCACAGgtatcc--gtttctgactgcgaattgtatgat-cgctcatgcaggatccaggagccaagtttattacatcgtgaatgtaatttctattttgaatattctttat
                       | ||||| ||||| || ||||| |  || || || || ||||| |||||||||||||| || |||||||| |||||||||| |  || | ||    |        |||  | | | |||   |     |      |  | ||  ||  |   |    |  | | || |||   | ||   
-----------------------GTATTGCAATTGGAGGAGATGTGTTCCCAGGATCTACTCTTTCTGATCATGTTTTGCGGTTTAACAACATCCCACAGgtattctagtgtttgcagtcattccccctgaggcacacctgccaaaaagttgcattttgcatgtt-tatttttttttccctccccacttggaaagctatta--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162197631|gb|FC374465.1|FC374465
EST:     CTGGGTCAACGCTTTCGGATCATGTTTTGCGCTTCAACAACATTCCACAG                         ATCAAGATGATTGTTGTCTTGGGAGAGTTGGGAGGAAAGGATGAATACTCC
genomic: CTGGGTCAACGCTTTCGGATCATGTTTTGCGCTTCAACAACATTCCACAGgtatccgttt ... tggtacgcagATCAAGATGATTGTTGTCTTGGGAGAGTTGGGAGGAAAGGATGAATACTCC
EST: gi|162150458|gb|FC326106.1|FC326106
EST:     CTGGGTCAACGCTTTCGGATCATGTTTTGCGCTTCAACAACATTCCACAG                         ATCAAGATGATTGTTGTCTTGGGAGAGTTGGGAGGAAAGGATGAATACTCC
genomic: CTGGGTCAACGCTTTCGGATCATGTTTTGCGCTTCAACAACATTCCACAGgtatccgttt ... tggtacgcagATCAAGATGATTGTTGTCTTGGGAGAGTTGGGAGGAAAGGATGAATACTCC
EST: gi|162196012|gb|FC372183.1|FC372183
EST:     TTGCGCTTCAACAACATTCCACAG                         ATCAAGATGATTGTTGTCTTGGGAGAGTTGGGAGGAAAGGATGAATACTCC
genomic: TTGCGCTTCAACAACATTCCACAGgtatccgttt ... tggtacgcagATCAAGATGATTGTTGTCTTGGGAGAGTTGGGAGGAAAGGATGAATACTCC